Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  394 bits (1012), Expect = e-114
 Identities = 211/390 (54%), Positives = 267/390 (68%), Gaps = 2/390 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF+ LGLS  +++ VA  GYQ P+ IQ QAIP +L G+D++AAAQTGTGKTA F LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           E L QG   R K+VRAL+L PTRELA Q+AE V  YG+   L+S  VFGGV    Q  +L
Sbjct: 61  ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             GVD+LVATPGRL+DLY Q AV F ++E +VLDEADRMLDMGFI  I KI+  LP + Q
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            L+FSAT S ++R LAK  V +P EIS+    ++ + + Q +  VDK+ KSA L  LI +
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
             W Q L+F  TKHGA +L   LE +GI A A H  +SQ  R + L +FKSG ++ LVAT
Sbjct: 241 GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            +AARG+DIDQL +VVN+DLP   ++YVHRIGRTGRA A G+A+S VS +  K L  IE 
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER 360

Query: 361 RLGHLIERRVVEGFEPKKPVPISILNYVPK 390
            +G L+ R  VEGFEP   +P +  N  PK
Sbjct: 361 LIGKLLPRAEVEGFEPTHTLPET--NLTPK 388