Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  357 bits (916), Expect = e-103
 Identities = 198/390 (50%), Positives = 253/390 (64%), Gaps = 9/390 (2%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M F+ LGL   +++ +A+ GY +PT IQ QAIP +L GRDL+A AQTGTGKTA F LPIL
Sbjct: 1   MLFTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPIL 60

Query: 61  EKLRQGQTQRK------KRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQ 114
           + L Q Q          ++ R LIL PTRELA+QV E V  YG+   LKS+++FGGV   
Sbjct: 61  QLLSQAQAGESPLNRLARKPRVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMN 120

Query: 115 AQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDC 174
            Q   L  GVD+LVA PGRL+D   QR +    IE++VLDEADRMLDMGFI  I KI+  
Sbjct: 121 PQIAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKILAL 180

Query: 175 LP--SEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSA 232
           LP   + Q LLFSAT S +++ELA++ + DP  I +A    +   +SQ +I VD++ K  
Sbjct: 181 LPPNGKRQNLLFSATFSDEIKELARSFLHDPQSIEVARRNTTVETVSQKVIHVDREKKKD 240

Query: 233 LLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSG 292
           +L HL   + W+Q LIF  TKHGA  L  +L+K GI + A H  ++Q  R + L +FK G
Sbjct: 241 VLLHLFENRGWNQVLIFTRTKHGADALSRRLDKEGIRSAALHGNKTQGARVRALTEFKEG 300

Query: 293 KIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNF 352
           K+  LVAT +AARGIDIDQL  VVNY+LP  A++YVHRIGRTGRA A GEAIS V  D  
Sbjct: 301 KLVALVATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIGRTGRAGAEGEAISLVCHDER 360

Query: 353 KNLCMIESRLGHLIERRVVEGFEPK-KPVP 381
            NL  IE  +   +E+ V+ GFEP   P P
Sbjct: 361 DNLRSIERLIKKDLEKEVLPGFEPSANPTP 390