Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  396 bits (1017), Expect = e-115
 Identities = 209/386 (54%), Positives = 265/386 (68%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSFS LGLS  L + V++ GY  P+ IQ QAIP +L G+D++AAAQTGTGKTA F LP+L
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           E L +G   +  + RAL+L PTRELA QV E VE YGK   L+S  VFGGV    Q  +L
Sbjct: 61  ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             GVDVLVATPGRL+DL  Q AV F ++E++VLDEADRMLDMGFI  I KI+  LP++ Q
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            L+FSAT S ++RELAK  V  P EIS+    A+ + + QW+  VDK  KSALL  LI +
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
           + W Q L+F  TKHGA +L   L +  I A A H  +SQ  R + L DFKSG+++ LVAT
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            +AARG+DIDQL +VVN+DLP   ++YVHRIGRTGRA A G+A+S VS +  K L  IE 
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIER 360

Query: 361 RLGHLIERRVVEGFEPKKPVPISILN 386
            +  ++ER+ VEGF P   +P + LN
Sbjct: 361 LINRVLERQEVEGFSPVHALPETTLN 386