Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  331 bits (849), Expect = 2e-95
 Identities = 173/378 (45%), Positives = 247/378 (65%), Gaps = 2/378 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSFS L L+  LV T+A+LGYQ+PT IQ +AIP IL  +D++A AQTGTGKTA+F LPIL
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  EKLRQGQTQ--RKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
           + L          K +RAL+LVPTRELA+QV +   +Y K T ++    +GGV  +AQ+ 
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
               G+DVL+ATPGRL+D   Q A+   ++  +V DEADRMLDMGF++ I  ++  +P++
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
            Q LLFSATL   +   +K  +RDP  I +A    + + I Q +  +D D K+  +SHL+
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
             + W Q LIF  TK G  KL +QL K G+  ++FH   SQ  R ++L++FK G ++ LV
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358
           AT VAARG+DI +L  V+N++LPF A++Y+HRIGRTGRA + G AI+  S+++   L  +
Sbjct: 301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 359 ESRLGHLIERRVVEGFEP 376
           E+ L   + ++   GFEP
Sbjct: 361 ETLLDKRLPQQWYPGFEP 378