Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  523 bits (1346), Expect = e-153
 Identities = 266/390 (68%), Positives = 317/390 (81%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M FSQLGL   LV+ V +LGYQ PT IQTQAIP IL G++++AAAQTGTGKTASFVLP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
            +       R KRVR++IL PTRELA+QV + + QY K   L ++A++GGVD   QK+RL
Sbjct: 61  HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
           I+GVD+LVATPGRL+D+Y QRA+ F+E+ ++VLDEADRMLDMGFIE IN II+ LP + Q
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            LLFSATLS++V+ LAKTA+ D  EI I+   A+ + I QWL TVDKD KSALLSHLI E
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIKE 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
             W QALIFI+TKHGAAKLVSQLEKRGI AEAFHSGRSQAIR QLL DFK+GK+ +LVAT
Sbjct: 241 NNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVAT 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
           GV +RGIDID L RV+NYDLP  AD+Y+HRIGRTGRA   GEAISFVSKD+F+NLC IE 
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360

Query: 361 RLGHLIERRVVEGFEPKKPVPISILNYVPK 390
           RLGH+IER+ +EGFEPKK VPISIL++VPK
Sbjct: 361 RLGHIIERKNIEGFEPKKAVPISILDFVPK 390