Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., ATP-dependent RNA helicase RhlE from Klebsiella michiganensis M5al

 Score =  369 bits (947), Expect = e-106
 Identities = 199/378 (52%), Positives = 253/378 (66%), Gaps = 2/378 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF  LGL+  +++ VA+ GY +PT IQ QAIP +LQGRDL+A+AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  EKLRQGQTQRKKR--VRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
           + L Q +   K R  VRALIL PTRELA Q+ E V  Y K   ++SL VFGGV    Q  
Sbjct: 61  QHLVQKEPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSINPQMM 120

Query: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
           +L  GVD+LVATPGRL+DL  Q AV  +++E++VLDEADRMLDMGFI  I +++  LP++
Sbjct: 121 KLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
            Q LLFSAT S +++ LA+  + +P EI +A    +   +SQ +  VDK  K  LLS +I
Sbjct: 181 RQNLLFSATFSDEIKSLAEKLLHNPLEIEVARRNTASEQVSQLVHFVDKKRKRELLSQMI 240

Query: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
            E  W Q L+F  TKHGA  L  QL K GI + A H  +SQ  R + L DFKSG I+ LV
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLV 300

Query: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358
           AT +AARG+DI++L  VVNY+LP   ++YVHRIGRTGRA A GEA+S V  D  K L  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDI 360

Query: 359 ESRLGHLIERRVVEGFEP 376
           E  L   I R  + G+EP
Sbjct: 361 ERLLKKEIPRIALAGYEP 378