Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., ATP-dependent RNA helicase from Caulobacter crescentus NA1000

 Score =  286 bits (731), Expect = 1e-81
 Identities = 152/349 (43%), Positives = 220/349 (63%), Gaps = 1/349 (0%)

Query: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
           FS LGL+  L++ +A+ GY++PT IQ QAIPV+LQG+DL+  AQTGTGKTA+F LPIL++
Sbjct: 4   FSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63

Query: 63  LRQGQTQRKKR-VRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 121
           L + +    +R  R L+L PTRELA Q+AE  + Y    GL    ++GGV    Q + L 
Sbjct: 64  LAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123

Query: 122 DGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
            G+DVLVATPGRLMD   +++      E+ VLDEAD+MLD+GF+  I KI   L    Q 
Sbjct: 124 GGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKNRQN 183

Query: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQ 241
           L FSAT+  ++ +LA   + +P ++S+A    +   I Q ++ ++   K  LL+ L  + 
Sbjct: 184 LFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADT 243

Query: 242 QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATG 301
            + + ++F  TK GA ++   L   GI A + H  ++Q  R + L  FK+G+++ LVAT 
Sbjct: 244 SFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATD 303

Query: 302 VAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
           +AARGID++ +S V+NY+LP   + YVHRIGRT R    G AISF + D
Sbjct: 304 IAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADD 352