Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., ATP-dependent RNA helicase RhlE from Paraburkholderia graminis OAS925

 Score =  361 bits (926), Expect = e-104
 Identities = 199/389 (51%), Positives = 250/389 (64%), Gaps = 7/389 (1%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF  LGLS+ LV+ V +LGY  PT IQTQAIP +L G DL+A AQTGTGKTA F LPIL
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  EKLRQ----GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQ 116
           ++L           K+ VRALIL PTRELA QV E V  YGK   LKS  +FGGV    Q
Sbjct: 61  QRLNSMPANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
              L  GVD++VATPGRL+D   Q+ +    +E++VLDEADRMLDMGFI  I +++  LP
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 177 SEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSH 236
            + Q LLFSAT S +++ LA   +  P  I +A    +   ++Q +  VD+D K  LL+H
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240

Query: 237 LINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKY 296
           LI +  W Q L+F  TKHGA +L  QL K GI A A H  +SQ+ R + L +FK G ++ 
Sbjct: 241 LIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQV 300

Query: 297 LVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLC 356
           LVAT +AARGIDIDQL  VVN+DLP   ++YVHRIGRTGRA A GEA+S V  D  + L 
Sbjct: 301 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLK 360

Query: 357 MIESRLGHLIERRVVEGFEP---KKPVPI 382
            IE  +   + + V+ GFEP    KP PI
Sbjct: 361 DIEKLIKRPVPQEVIAGFEPDPTAKPEPI 389