Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., putative ATP-dependent RNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  309 bits (791), Expect = 1e-88
 Identities = 162/369 (43%), Positives = 239/369 (64%), Gaps = 1/369 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F +L +++ +++ + + GY  PT IQ +AIPV L  +D++  AQTGTGKTASF +PI+
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 61  EKLRQGQTQRKK-RVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           + L   + + K+  ++ALIL PTRELA+Q++E +E Y K T ++   +FGGV+++ Q   
Sbjct: 61  QHLHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  G+D+LVATPGRL+DL  Q  +  + I+  VLDEADRMLDMGFI  I +I+  LP E 
Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q L FSAT+   +  L  + +++P +I +    ++  +I Q +  V+K  KS LL  ++ 
Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQ 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           + +    LIF  TKH A K+V  L K GI ++A H  +SQA R   L +FKSGK + +VA
Sbjct: 241 KSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T +A+RGIDI++L  V+NYDLP   + YVHRIGRTGRA   G A++F S++  K +  I+
Sbjct: 301 TDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDIQ 360

Query: 360 SRLGHLIER 368
              G  + R
Sbjct: 361 KLTGKKLNR 369