Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  246 bits (627), Expect = 1e-69
 Identities = 148/413 (35%), Positives = 223/413 (53%), Gaps = 2/413 (0%)

Query: 28  IVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQF 87
           +  +L R +  +  D  G+I   N  FL  M Y  +++IG+            +    +F
Sbjct: 38  VKESLDREMLGLTLDADGRIQSVNQNFLDEMRYKSQDLIGRAVDELVPGYLKTNEFQVRF 97

Query: 88  WKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQ 147
             +L +G+        L+ +G   W+ +   PV+   G V      ++D+T+    + + 
Sbjct: 98  KSALTRGEHFSGAVRLLRGNGQEAWLRSILQPVQGADGRVRFFSMYSNDLTRTIEASREH 157

Query: 148 AAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENP-- 205
             +  +L RS+A+I+F+  G +  AN+ FL A GY L +I GKHHRMFC+   Y      
Sbjct: 158 ENLIGALVRSTAVIEFDLGGHVLTANDRFLNAMGYSLAQIKGKHHRMFCEPEEYNSAAYE 217

Query: 206 NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAH 265
            FW+ L  GEF +G F R    G+++WLEA+YNP+ +    + +VVKFA+++TDQV +  
Sbjct: 218 QFWKRLNSGEFVAGRFKRIDSSGREVWLEASYNPVLDANERLYKVVKFATNITDQVNQEK 277

Query: 266 ATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQ 325
           A  EA+ +A  TS +T   A+ G  ++  A  +   +   +  A   +  L+ QS  I  
Sbjct: 278 AVAEAANIAYSTSLQTDNSAQRGTTVVTQAVDVMRDLARHMQTAGEGIEALNEQSLVIGT 337

Query: 326 IVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKR 385
           IV TI+ IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LAS TSQAT EI  +V++
Sbjct: 338 IVKTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSQATDEIVGVVRQ 397

Query: 386 NSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNIVDE 438
           N  +   +   M   Q +      +  +  ++I +IQ  A+ V   VS   ++
Sbjct: 398 NQDMARNAVALMTDGQHQAEHGLALAAEAGTVIVEIQDGAKKVVDAVSQFANQ 450



 Score =  109 bits (272), Expect = 2e-28
 Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 19  VEQHNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPET 78
           +E      +++ AL R+ A IEFD  G +L AN  FL+AMGY+  ++ G+HH++FC+PE 
Sbjct: 151 IEASREHENLIGALVRSTAVIEFDLGGHVLTANDRFLNAMGYSLAQIKGKHHRMFCEPEE 210

Query: 79  VNSLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVT 138
            NS  Y QFWK L  G+     F R+   G  +W+EA+Y PV +    +YKV+K A ++T
Sbjct: 211 YNSAAYEQFWKRLNSGEFVAGRFKRIDSSGREVWLEASYNPVLDANERLYKVVKFATNIT 270

Query: 139 KAKITADKQAAVFHSLDRSSAM 160
             ++  +K  A   ++  S+++
Sbjct: 271 D-QVNQEKAVAEAANIAYSTSL 291