Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  306 bits (785), Expect = 6e-88
 Identities = 169/400 (42%), Positives = 234/400 (58%), Gaps = 2/400 (0%)

Query: 36  LAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFWKSLAQGQ 95
           +A IEF P GK+L AN  FL  MGY  +++ G  H+ FC P  V S EY +FW  L  GQ
Sbjct: 1   MAVIEFSPDGKVLRANENFLGTMGYRADQLAGLSHRDFCTPALVGSAEYREFWNQLRAGQ 60

Query: 96  AQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQAAVFHSLD 155
                F R    G ++W+EA+Y P+ +  G V KV+K A DVT    +  +      +LD
Sbjct: 61  FVSGTFQRRSAQGQNVWLEASYNPIVDEQGRVVKVVKYALDVTAKVASEAETRGRLAALD 120

Query: 156 RSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFY--KENPNFWRELAR 213
           R+ A+I+F+  G I  AN+NF+    Y L E+ GKHHRMFC+       E  +FWR L  
Sbjct: 121 RAMAVIEFDLGGHILTANDNFMNVMNYTLAELKGKHHRMFCEPSLVGSSEYSDFWRRLNA 180

Query: 214 GEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATKEASQM 273
           GEF SG F R  ++G+ +WLEA+YNP+++  G + ++VKFASD++++V K       +  
Sbjct: 181 GEFFSGQFKRLGKNGKVVWLEASYNPVYDAEGKLCKIVKFASDISERVEKFEEDSRGASR 240

Query: 274 AQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVTTINKI 333
           A   SAET RVAE G ++I   A     I ++I  +  L+  L ++S+ IT IV TI  I
Sbjct: 241 AYHISAETERVAEQGAQVIHQTAKEMREIADNIGSSARLVGQLGARSEEITAIVNTIRGI 300

Query: 334 AEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQS 393
           A+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA  TS++TSEI  ++      T  +
Sbjct: 301 ADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSRSTSEIAEMIGMILSETRDA 360

Query: 394 GQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVS 433
             +M            +  Q  S+I QI++   +  + VS
Sbjct: 361 VASMNVTHEGALRGVTLADQAGSVIVQIRNGTTDALEAVS 400



 Score =  103 bits (257), Expect = 1e-26
 Identities = 48/111 (43%), Positives = 72/111 (64%)

Query: 29  VSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFW 88
           ++AL R +A IEFD  G IL AN  F++ M YT  E+ G+HH++FC+P  V S EY+ FW
Sbjct: 116 LAALDRAMAVIEFDLGGHILTANDNFMNVMNYTLAELKGKHHRMFCEPSLVGSSEYSDFW 175

Query: 89  KSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTK 139
           + L  G+     F RL K+G  +W+EA+Y PV +  G + K++K A D+++
Sbjct: 176 RRLNAGEFFSGQFKRLGKNGKVVWLEASYNPVYDAEGKLCKIVKFASDISE 226