Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  266 bits (680), Expect = 1e-75
 Identities = 152/419 (36%), Positives = 238/419 (56%), Gaps = 8/419 (1%)

Query: 25  DSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEY 84
           D  I  +L R +  +E D QG+I  AN LFL+ MGY +++++G+    F   +      Y
Sbjct: 20  DRQIKDSLYREMMVLELDRQGRIQYANELFLNEMGYRRDDIVGRALDDFFTAQFRAEPNY 79

Query: 85  AQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITA 144
           A+   ++ + +     +  L+ DG   W+ + + P+++  G +      A ++T+    +
Sbjct: 80  ARLKTAMQRAEHISGAYRLLRADGQEAWLRSIWQPIKSSNGTLLHFTLCATNLTRTIEAS 139

Query: 145 DKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCD-----DR 199
            +  +V ++L RS+A+I+F+  G +  AN+ FL   GYRLE+I GKHHRMFC+       
Sbjct: 140 REHESVINALLRSTAVIEFDLGGHVITANQRFLDGMGYRLEQIKGKHHRMFCEREEAESA 199

Query: 200 FYKENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTD 259
            Y+E   FW  L RGE+ +  F R   HGQ +WLEA+YNP+ +  G + +V+KFA+ +TD
Sbjct: 200 AYRE---FWASLNRGEYIAERFKRIDAHGQAVWLEASYNPVHDAYGKLYKVIKFATVITD 256

Query: 260 QVLKAHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQ 319
           QV +  A  EA+ +A  TS  T   A+ G +++     +   I + +  A+  +  L  Q
Sbjct: 257 QVNRELAVAEAATIAFDTSQHTDLSAQRGAQVVQQTVDVMHRIAQQMQDASDGIEALDKQ 316

Query: 320 SQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEI 379
           SQ I+ I+ TI+ IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+ TS A  EI
Sbjct: 317 SQLISAILKTISGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAARTSTAAKEI 376

Query: 380 DNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNIVDE 438
             +V++N  L + +  +M   + +  +      Q  ++I +IQ  A+ V   V     +
Sbjct: 377 VGVVQKNQDLAQAAVHSMSVSREQTEQGLEFANQAGAVIVEIQDGAQRVVSAVGQFASQ 435



 Score =  105 bits (263), Expect = 2e-27
 Identities = 48/120 (40%), Positives = 73/120 (60%)

Query: 19  VEQHNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPET 78
           +E       +++AL R+ A IEFD  G ++ AN  FL  MGY  E++ G+HH++FC+ E 
Sbjct: 136 IEASREHESVINALLRSTAVIEFDLGGHVITANQRFLDGMGYRLEQIKGKHHRMFCEREE 195

Query: 79  VNSLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVT 138
             S  Y +FW SL +G+   + F R+   G ++W+EA+Y PV +  G +YKVIK A  +T
Sbjct: 196 AESAAYREFWASLNRGEYIAERFKRIDAHGQAVWLEASYNPVHDAYGKLYKVIKFATVIT 255