Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  118 bits (295), Expect = 5e-31
 Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 28/211 (13%)

Query: 246 VVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITES 305
           V T + + A+ V +    A  T EA+  A   +A       +G E+++        + + 
Sbjct: 284 VATAINQMAASVQEVANNAQRTAEAASRADSETA-------TGTEVVNRTGAAIGQLAQD 336

Query: 306 IAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEV 365
           I  A  ++ +L + S  IT+++  I  IAEQTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 337 IQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 396

Query: 366 RSLASNTSQATSEIDNIV---------------------KRNSQLTEQSGQTMEQIQAKV 404
           R+LAS T Q+T EI+ ++                      ++ +   Q+ +++  I ++V
Sbjct: 397 RNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRV 456

Query: 405 TEFNHMLQQTQSLIEQIQHAAENVQKTVSNI 435
           TE + M QQ  + +EQ    +EN+ + + +I
Sbjct: 457 TEISEMSQQIAAAVEQQSAVSENINQNIVSI 487



 Score = 49.3 bits (116), Expect = 3e-10
 Identities = 57/283 (20%), Positives = 111/283 (39%), Gaps = 22/283 (7%)

Query: 166 DGTIKEANENFLKATGYRLEEIVGKHHRMF-CDDRFYKENPNFWRELARGEFKSGLFHRR 224
           +G I   N +F+K +G+   E++G+HH +    D   +   + W  +  G    G+   R
Sbjct: 27  NGDITYVNPDFIKISGFEESELIGQHHNIVRHPDMPTEAFADLWGSVRGGRSWMGMVKNR 86

Query: 225 TRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRV 284
            ++G   W+ A   PI  + G V +     +      + A     A    ++T     R 
Sbjct: 87  CKNGDHYWVSAFVTPISRN-GRVMEYQSVRTKPQPAQIAAAERLYAQLRDKRTPVALRRK 145

Query: 285 AESGREMI-------DAAATIASGITESIAGANALMTDLSS---QSQRITQIVTTINKIA 334
             S R  +        A   +A G+      A AL T  ++           +  + ++A
Sbjct: 146 PLSARSRVALFAALGAAPCVVAGGLLGGAGVAIALATAAAAALGAGGLAYLALAPLQQLA 205

Query: 335 EQTNLLALNAA---IEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLTE 391
           EQ   +  N     I A R  EYG+    +A  ++ L    ++A + +  I   + QL++
Sbjct: 206 EQARQVGDNPVGQLIYAGRRDEYGQ----IAFAMKML---ETEAGAMVGRIGDASRQLSQ 258

Query: 392 QSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSN 434
            + + +  + +     +    +T  +   I   A +VQ+  +N
Sbjct: 259 HAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANN 301



 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 42  DPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFWKSLAQGQAQRKMF 101
           D  G I   N  F+   G+ + E+IGQHH I   P+ + +  +A  W S+  G++   M 
Sbjct: 25  DLNGDITYVNPDFIKISGFEESELIGQHHNIVRHPD-MPTEAFADLWGSVRGGRSWMGMV 83

Query: 102 HRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITA 144
               K+G   W+ A   P+ +R G V +   V      A+I A
Sbjct: 84  KNRCKNGDHYWVSAFVTPI-SRNGRVMEYQSVRTKPQPAQIAA 125



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 260 QVLKAHATKEASQMA-QQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSS 318
           Q++ A    E  Q+A      ET   A  GR + DA+  ++    E +   ++     S 
Sbjct: 218 QLIYAGRRDEYGQIAFAMKMLETEAGAMVGR-IGDASRQLSQHAHELLGAMDSSTQSASR 276

Query: 319 QSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSE 378
           Q     Q+ T IN++A     +A NA   A  A       A   + V    +   Q   +
Sbjct: 277 QQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQD 336

Query: 379 IDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAEN 427
           I           +Q+G  + +++A   +   +L   + + EQ    A N
Sbjct: 337 I-----------QQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALN 374