Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., Methyl-accepting chemotaxis protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  273 bits (699), Expect = 9e-78
 Identities = 164/461 (35%), Positives = 244/461 (52%), Gaps = 51/461 (11%)

Query: 4   KPFMPFWKKAAAQSEVEQHNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKE 63
           KP+          ++V Q       + A+ + +A IEF   G +LDANA FL  MGY  +
Sbjct: 119 KPYRVVKYATDITAQVRQTADFEGRIDAIDKVMAVIEFSLDGTVLDANANFLEVMGYRLD 178

Query: 64  EVIGQHHKIFCDPETVNSLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNR 123
           E+ GQHH++F +P    S EY  FW+ L +G+     + R+ +DG  +WI+A+Y PV + 
Sbjct: 179 EIRGQHHRLFVEPAQRQSAEYRVFWEKLGRGEFDAGRYKRVGRDGREVWIQASYNPVLDE 238

Query: 124 AGDVYKVIKVAHDVTKAKITADKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYR 183
            G  YKVIK A D+T+  + +        ++ +   +I+F+ DG +  AN+NFL   GYR
Sbjct: 239 RGRPYKVIKYATDITRQVVESADADGRIQAIAKVMGVIEFDLDGRVLSANDNFLAILGYR 298

Query: 184 LEEIVGKHHRMFCDDRF--YKENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIF 241
            +E +GKHH +F D  +   ++   FW  LARG+F +G + R  + G   W++A+YNPI 
Sbjct: 299 ADEAIGKHHSVFVDAAYSASEDYRQFWATLARGQFDAGRYRRLRKDGSTAWIQASYNPIL 358

Query: 242 NDAGVVTQVVKFASDVTDQVLKAHATKE-------------------------------- 269
           + +G   +VVK+A+DVTDQV  A   ++                                
Sbjct: 359 DVSGRPYKVVKYATDVTDQVRSAERMRDLVRQTMGIAQNVQREAHHISASNQELVSRAAS 418

Query: 270 ASQMAQQTS------AETVRV----AESGREMIDAAATIASGITESIAGANALMTDLSSQ 319
            S   QQTS      AETVR     A + + M + +AT+A      IA      + +   
Sbjct: 419 QSDAVQQTSTSIEQLAETVRANSENAGAAQHMAEESATVARKGAHVIAEVVQTTSSIRKA 478

Query: 320 SQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEI 379
           + RI QI+  I+ IA QTN+LALNAA+EAARAGE GRGFAVVA EVRSLA   S +  EI
Sbjct: 479 TDRIGQIIEVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRCSVSAREI 538

Query: 380 DNIVK-------RNSQLTEQSGQTMEQIQAKVTEFNHMLQQ 413
            ++++         S+L EQ+G+ M+ +   V +    ++Q
Sbjct: 539 RSLIEDATNQVGDGSRLAEQAGKVMQDMVTSVLKVTATVEQ 579



 Score =  200 bits (508), Expect = 1e-55
 Identities = 99/238 (41%), Positives = 158/238 (66%), Gaps = 4/238 (1%)

Query: 30  SALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFWK 89
           +A+ R +A IEFD +G+ILDAN  FL+ MGY  E+V+G+HH++F  P    S  Y QFW 
Sbjct: 23  TAMDRVMAVIEFDLEGRILDANHNFLALMGYRLEDVVGKHHRMFVHPSERESDGYRQFWD 82

Query: 90  SLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVT-KAKITADKQA 148
           +L +G      + RL      +WI A+Y P+ +R+G  Y+V+K A D+T + + TAD + 
Sbjct: 83  TLRRGDFHAGRYCRLGNGEREVWINASYNPLLDRSGKPYRVVKYATDITAQVRQTADFEG 142

Query: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCD--DRFYKENPN 206
            +  ++D+  A+I+F+ DGT+ +AN NFL+  GYRL+EI G+HHR+F +   R   E   
Sbjct: 143 RI-DAIDKVMAVIEFSLDGTVLDANANFLEVMGYRLDEIRGQHHRLFVEPAQRQSAEYRV 201

Query: 207 FWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA 264
           FW +L RGEF +G + R  R G+++W++A+YNP+ ++ G   +V+K+A+D+T QV+++
Sbjct: 202 FWEKLGRGEFDAGRYKRVGRDGREVWIQASYNPVLDERGRPYKVIKYATDITRQVVES 259