Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  319 bits (817), Expect = 1e-91
 Identities = 176/408 (43%), Positives = 249/408 (61%), Gaps = 2/408 (0%)

Query: 28  IVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQF 87
           + SAL++++A +E    GKIL AN  FL+AMGY  EE+  + H+ FC+PE + S EYA  
Sbjct: 23  LTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEELATKTHRDFCEPEMLRSREYADL 82

Query: 88  WKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQ 147
           W SL  G+     F R+ K+G S+W+EA+Y PV +  G+V KV+K A DVT   +  ++ 
Sbjct: 83  WASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQGNVVKVVKYALDVTTRVMLENET 142

Query: 148 AAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYK--ENP 205
           ++   ++DR+ A+ +F P+G +  AN NFL   GY L EI GKHHR FC+       E  
Sbjct: 143 SSKLAAVDRAMAICEFEPNGNVITANNNFLNVMGYALAEIKGKHHRSFCEPTLVNSPEYT 202

Query: 206 NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAH 265
            FWR+L  GEF    F R  + G+ +WLEATYNP+F+  G + ++VKFASD+T +V K  
Sbjct: 203 EFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDVDGKLYKIVKFASDITQRVEKQE 262

Query: 266 ATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQ 325
           A    +  A   SAET +VAE G  +I   A     I+E+I  +  L++ L  +S++IT 
Sbjct: 263 ADAHGASRAYHISAETEKVAEQGTLVIQETAREMRQISENIGASAKLVSQLGDRSEQITA 322

Query: 326 IVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKR 385
           IV TI  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA  TS +T+EI  ++ +
Sbjct: 323 IVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSGSTTEIAEMIGK 382

Query: 386 NSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVS 433
               T ++  +M+  Q        +  Q   +I QI+  A +  + V+
Sbjct: 383 ILAETREAVASMDATQEGAIRGVTLADQAGQVIVQIRDGASDAVEAVN 430



 Score =  115 bits (288), Expect = 3e-30
 Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 3/141 (2%)

Query: 17  SEVEQHNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDP 76
           + V   N  S  ++A+ R +A  EF+P G ++ AN  FL+ MGY   E+ G+HH+ FC+P
Sbjct: 134 TRVMLENETSSKLAAVDRAMAICEFEPNGNVITANNNFLNVMGYALAEIKGKHHRSFCEP 193

Query: 77  ETVNSLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHD 136
             VNS EY +FW+ L  G+     F R+ K G  +W+EATY PV +  G +YK++K A D
Sbjct: 194 TLVNSPEYTEFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDVDGKLYKIVKFASD 253

Query: 137 VTKAKITADKQAAVFHSLDRS 157
           +T+     +KQ A  H   R+
Sbjct: 254 ITQ---RVEKQEADAHGASRA 271



 Score =  103 bits (258), Expect = 8e-27
 Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 4/161 (2%)

Query: 136 DVTKAKITADKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMF 195
           ++T  K   D    +  +L++S A+++   DG I  AN+NFL A GYR EE+  K HR F
Sbjct: 9   ELTAMKAQVDGLKGLTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEELATKTHRDF 68

Query: 196 CDDRFY--KENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKF 253
           C+      +E  + W  L  G+F SG F R  ++G  +WLEA+YNP+ +  G V +VVK+
Sbjct: 69  CEPEMLRSREYADLWASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQGNVVKVVKY 128

Query: 254 ASDVTDQVLKAHATKEASQMAQQTSAETVRVAESGREMIDA 294
           A DVT +V+  + T  +S++A    A  +   E    +I A
Sbjct: 129 ALDVTTRVMLENET--SSKLAAVDRAMAICEFEPNGNVITA 167