Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  115 bits (287), Expect = 4e-30
 Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 33/214 (15%)

Query: 244 AGVVTQVVKFASDVTDQVLK-AHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGI 302
           A  + Q+     +VT  V   AHA +EA ++AQQ           GR + D +      +
Sbjct: 282 ATAINQMAATIQEVTHNVQNTAHAAEEADKLAQQ-----------GRGLADESLLAIRHM 330

Query: 303 TESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVA 362
             S+      + +L+  +Q I  +V  I  IA+QTNLLALNAAIEAARAGE GRGFAVVA
Sbjct: 331 ATSVTDIGNAVGELADATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVA 390

Query: 363 DEVRSLASNTSQATSEIDNIV--------------KRNSQLTEQSGQTMEQIQ------- 401
           DEVRSLAS T  +T +I  I+               +  Q++++S  ++E +Q       
Sbjct: 391 DEVRSLASRTQSSTEQIQQIITSLRDGADRAVKTASKGEQISQESVASVEAVQKALDGIS 450

Query: 402 AKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNI 435
             VT    M QQ  S  E+  H AE + + ++ I
Sbjct: 451 QSVTRITGMSQQMASASEEQSHVAETISQQITRI 484



 Score = 45.4 bits (106), Expect = 4e-09
 Identities = 51/272 (18%), Positives = 113/272 (41%), Gaps = 13/272 (4%)

Query: 169 IKEANENFLKATGYRLEEIVGKHHRMFCD-DRFYKENPNFWRELARGEFKSGLFHRRTRH 227
           I   N+ F+  +G+  EE+VG+ H +    D       + W  + +G+   G+   R++ 
Sbjct: 30  ITYCNDAFVTLSGFTREELVGQPHNLVRHPDMPASVFAHMWETIKQGKPWMGVVKNRSKQ 89

Query: 228 GQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA---HATKEASQMAQQTSAETVRV 284
           G   W+ A    ++ +  +V      +    DQV +A   +A   A + A   S+     
Sbjct: 90  GDYYWVSAYVTAVYENGRIVGYESVRSLPTRDQVRRAEALYARLRAGKAAVSASSSAAYH 149

Query: 285 AESGREMIDAAATIASGI-----TESIAGANALMTDLS--SQSQRITQIVTTINKIAEQT 337
                 MI  A  +A G+       SI     +M  L    + ++ + I  T+ +  +  
Sbjct: 150 LIRQLPMILCALALAVGVYLLDDLPSIIMIPIVMVVLGVFLEVRQRSSIRKTLEEHPKAF 209

Query: 338 NLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATS--EIDNIVKRNSQLTEQSGQ 395
               +      +R  +     A++++E R   + T  A +   +     R++QL+ +  +
Sbjct: 210 TSALIALTYSDSRGPQAQLDLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAE 269

Query: 396 TMEQIQAKVTEFNHMLQQTQSLIEQIQHAAEN 427
           +++Q +++  +    + Q  + I+++ H  +N
Sbjct: 270 SLDQQRSEADQSATAINQMAATIQEVTHNVQN 301



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 42  DPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFWKSLAQGQAQRKMF 101
           D    I   N  F++  G+T+EE++GQ H +   P+   S+ +A  W+++ QG+    + 
Sbjct: 25  DLNSHITYCNDAFVTLSGFTREELVGQPHNLVRHPDMPASV-FAHMWETIKQGKPWMGVV 83

Query: 102 HRLKKDGSSIWIEA 115
               K G   W+ A
Sbjct: 84  KNRSKQGDYYWVSA 97



 Score = 31.6 bits (70), Expect = 6e-05
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 17/134 (12%)

Query: 269 EASQMAQQTSAETVRVAE---SGREMIDAAATIASG----ITESIAGANALMTDLSSQSQ 321
           E   +A +T + T ++ +   S R+  D A   AS       ES+A   A+   L   SQ
Sbjct: 392 EVRSLASRTQSSTEQIQQIITSLRDGADRAVKTASKGEQISQESVASVEAVQKALDGISQ 451

Query: 322 RITQIVTTINKIA---EQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSE 378
            +T+I     ++A   E+ + +A   + +  R        A + DE  S A   SQ +SE
Sbjct: 452 SVTRITGMSQQMASASEEQSHVAETISQQITR-------IAQLCDESASQAQQGSQISSE 504

Query: 379 IDNIVKRNSQLTEQ 392
           ++ + +    L E+
Sbjct: 505 LEEMAQYLHSLAER 518