Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  283 bits (723), Expect = 1e-80
 Identities = 166/433 (38%), Positives = 242/433 (55%), Gaps = 16/433 (3%)

Query: 22  HNHDSDIVSALKRNLAYIE--------------FDPQGKILDANALFLSAMGYTKEEVIG 67
           ++H  +   AL+R LA +E               D  GKI   NALF + M Y + E++G
Sbjct: 18  NSHLKNTNKALERRLAMLEQAGQILNLETVAVVLDGTGKIQTVNALFETEMSYAQAELVG 77

Query: 68  QHHKIFCDPETVNSLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDV 127
           +       PE    +   +   ++  G+        + K GS +W+    +P +N  G V
Sbjct: 78  RSLSELSPPELSGDVHQKRALTAIRDGKHFSGTLRLVSKTGSRVWLRTIVVPYKNETGGV 137

Query: 128 YKVIKVAHDVTKAKITADKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEI 187
            ++   +  +T+    + +  A+ ++L RS+A+I F  DGT+  AN+NFL+A GY L +I
Sbjct: 138 EQITLYSSVLTRTIEASRENEALVNALQRSTAVIDFTLDGTVISANDNFLRAMGYELNQI 197

Query: 188 VGKHHRMFC--DDRFYKENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAG 245
            GKHH+MFC  ++        FW  L RGEF    F R  + G+D+WLEA+YNPI +  G
Sbjct: 198 KGKHHKMFCVPEESASDAYTQFWERLRRGEFIVDRFRRIDKGGRDVWLEASYNPITDANG 257

Query: 246 VVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITES 305
            + ++ KFA+ +T+QV +  A  EAS+MA QTS +T   A+ GR++I     +   +T S
Sbjct: 258 KLYKIAKFATVITEQVEREKAVAEASEMAYQTSIDTDSSAQQGRKVIKDTLQMLGQLTIS 317

Query: 306 IAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEV 365
           +  A   +  L SQSQ I  I+ TI+ IAEQTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 318 MEEATRGIEALDSQSQVIGTIIKTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 377

Query: 366 RSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAA 425
           R LAS T++A  EI N+VK N  L   +   + +   + +E   +      +I++IQH A
Sbjct: 378 RQLASRTTKAAEEIVNVVKTNQSLASDAVGVIVRSTEQASEALVLANDADRVIQEIQHGA 437

Query: 426 ENVQKTVSNIVDE 438
             V + VS  VD+
Sbjct: 438 NTVVRAVSRFVDQ 450



 Score =  101 bits (251), Expect = 6e-26
 Identities = 47/121 (38%), Positives = 73/121 (60%)

Query: 19  VEQHNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPET 78
           +E    +  +V+AL+R+ A I+F   G ++ AN  FL AMGY   ++ G+HHK+FC PE 
Sbjct: 151 IEASRENEALVNALQRSTAVIDFTLDGTVISANDNFLRAMGYELNQIKGKHHKMFCVPEE 210

Query: 79  VNSLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVT 138
             S  Y QFW+ L +G+     F R+ K G  +W+EA+Y P+ +  G +YK+ K A  +T
Sbjct: 211 SASDAYTQFWERLRRGEFIVDRFRRIDKGGRDVWLEASYNPITDANGKLYKIAKFATVIT 270

Query: 139 K 139
           +
Sbjct: 271 E 271