Pairwise Alignments
Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 710 a.a., PAS from Pseudomonas syringae pv. syringae B728a
Score = 306 bits (785), Expect = 1e-87
Identities = 164/430 (38%), Positives = 261/430 (60%), Gaps = 36/430 (8%)
Query: 29 VSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFW 88
V+A++R+ A IEFD GK+L AN FL+ GY +E++G+HH++FC E V+SL+Y + W
Sbjct: 267 VTAIERSQAVIEFDLTGKVLHANRNFLAVFGYDLDEIVGEHHRMFCSEEFVSSLQYRELW 326
Query: 89 KSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQA 148
+ L +G+ + R +KDG IWI+ATY P+ + G YK++K A DVT AK T+ +
Sbjct: 327 EKLGRGEYDANEYKRKRKDGKEIWIQATYNPIFDAQGKPYKIVKFALDVTVAKETSVEDQ 386
Query: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYK--ENPN 206
+++DR+ A+I+F+ G I AN NFLKA GY L EI GKHHR+FC++ + + E
Sbjct: 387 GKVNAIDRAQAVIEFDMAGNIITANANFLKALGYGLLEIKGKHHRIFCEEEYVRGTEYRE 446
Query: 207 FWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHA 266
FW L +GEF SG F R +++GQ +W++ATY+PIF+ G+ +VVKFA+D+T QV
Sbjct: 447 FWHGLGQGEFYSGRFMRVSKYGQKIWIQATYSPIFDHDGLPFKVVKFATDITRQV----- 501
Query: 267 TKEASQMAQQTSAETVRVAESGREMIDAAATIASGI-----------------TESIAGA 309
+M Q A+T + ES + +++A + +A ++++ A
Sbjct: 502 -----EMEQAIEAKTRAMGESVKALMNAISYVAQSTETATDLARMTREQARSGSQTLVKA 556
Query: 310 NALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLA 369
+ M ++ ++ I I+ I++IA QTN+LA NAAIEAARAGE+G GF+VVADEVR LA
Sbjct: 557 SDAMGMIAKSAEGIQDIIQVISEIASQTNMLAFNAAIEAARAGEHGLGFSVVADEVRKLA 616
Query: 370 SNTSQATSEIDNI-------VKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQ 422
+S+AT EI+ + ++ ++++ +G+ E I V + + + E+ +
Sbjct: 617 EKSSRATKEINKLILETVSRIESGNEISRSAGEAFEHIVEGVMQTTQAIDGINTATEKQR 676
Query: 423 HAAENVQKTV 432
+A+ V+ +
Sbjct: 677 LSAQEVETLI 686
Score = 221 bits (562), Expect = 8e-62
Identities = 115/269 (42%), Positives = 168/269 (62%), Gaps = 15/269 (5%)
Query: 28 IVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQF 87
+++A+ R+ A IEFD G IL AN FL +GY +EV G+HH++FC PE +S+EY F
Sbjct: 22 LMTAIDRSQAMIEFDLDGNILRANTNFLDCVGYRLDEVQGRHHRMFCTPEHASSVEYVTF 81
Query: 88 WKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQ 147
W+ L +G + RL K+G IW++ATY PV + G+ +KV+K A DVT + + +
Sbjct: 82 WEKLGKGAFDEGQYKRLGKNGREIWLQATYNPVFDEQGNPFKVVKFATDVTAQRKSNAEY 141
Query: 148 AAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENP-- 205
++DRS +I+F+ +G + ANENFLK GYRL+EI G+HHRMFC+D Y +P
Sbjct: 142 EGKVAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQHHRMFCEDD-YLNSPAY 200
Query: 206 -NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA 264
FW +L RGE+ SG + R ++G++LW+ ATYNPIF+ G +VVKFA+DVT+
Sbjct: 201 RAFWAKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYKVVKFANDVTE----- 255
Query: 265 HATKEASQMAQQTSAETVRVAESGREMID 293
S++ Q SA V E + +I+
Sbjct: 256 ------SRIRQAESAGKVTAIERSQAVIE 278
Score = 209 bits (532), Expect = 2e-58
Identities = 104/276 (37%), Positives = 166/276 (60%), Gaps = 4/276 (1%)
Query: 29 VSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFW 88
V+A+ R+ IEFD G++L+AN FL +GY +E+ GQHH++FC+ + +NS Y FW
Sbjct: 145 VAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQHHRMFCEDDYLNSPAYRAFW 204
Query: 89 KSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQA 148
L +G+ + R+ K+G +WI ATY P+ + G YKV+K A+DVT+++I + A
Sbjct: 205 AKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYKVVKFANDVTESRIRQAESA 264
Query: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYK--ENPN 206
+++RS A+I+F+ G + AN NFL GY L+EIVG+HHRMFC + F +
Sbjct: 265 GKVTAIERSQAVIEFDLTGKVLHANRNFLAVFGYDLDEIVGEHHRMFCSEEFVSSLQYRE 324
Query: 207 FWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHA 266
W +L RGE+ + + R+ + G+++W++ATYNPIF+ G ++VKFA DVT V K +
Sbjct: 325 LWEKLGRGEYDANEYKRKRKDGKEIWIQATYNPIFDAQGKPYKIVKFALDVT--VAKETS 382
Query: 267 TKEASQMAQQTSAETVRVAESGREMIDAAATIASGI 302
++ ++ A+ V + +I A A +
Sbjct: 383 VEDQGKVNAIDRAQAVIEFDMAGNIITANANFLKAL 418
Score = 108 bits (270), Expect = 5e-28
Identities = 53/115 (46%), Positives = 71/115 (61%)
Query: 25 DSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEY 84
D V+A+ R A IEFD G I+ ANA FL A+GY E+ G+HH+IFC+ E V EY
Sbjct: 385 DQGKVNAIDRAQAVIEFDMAGNIITANANFLKALGYGLLEIKGKHHRIFCEEEYVRGTEY 444
Query: 85 AQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTK 139
+FW L QG+ F R+ K G IWI+ATY P+ + G +KV+K A D+T+
Sbjct: 445 REFWHGLGQGEFYSGRFMRVSKYGQKIWIQATYSPIFDHDGLPFKVVKFATDITR 499