Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  254 bits (648), Expect = 5e-72
 Identities = 155/408 (37%), Positives = 232/408 (56%), Gaps = 14/408 (3%)

Query: 39  IEFDPQGKILDANALFLSAMGYTKEEVIGQH--HKIFCDPETVNSLE-YAQFWKSLAQGQ 95
           +  D    I+ AN   LS +GY+ E+V+G+   H +   P  V  L+ Y     ++ +G+
Sbjct: 34  LTLDASYHIVHANDNLLSTLGYSLEQVLGKDLDHLV---PTYVKQLDCYRSLKVAVQKGE 90

Query: 96  AQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQAAVFHSLD 155
           +    +  L  DG  IWI A + PV +  G +  +     D+T+   TA + +A   +L 
Sbjct: 91  SVIDRYRFLHADGRLIWIRALWQPVLDEQGRLMTLQCYGSDITQIVETAAENSAFIQALL 150

Query: 156 RSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCD-----DRFYKENPNFWRE 210
           RS+A+I+FN  G +  AN+ FL+  GY L +I GKHH MFCD        Y+E   FW  
Sbjct: 151 RSTAVIEFNLSGQVLTANDQFLRGMGYSLAQIKGKHHSMFCDPAETSQASYRE---FWAM 207

Query: 211 LARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATKEA 270
           L RGEF +G F R   +G+++WLEATYNP+ +  G + +VVKFA+ VTDQV +     +A
Sbjct: 208 LNRGEFVAGRFKRIDSNGREVWLEATYNPVHDAQGKLYKVVKFATMVTDQVAREEEVSQA 267

Query: 271 SQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVTTI 330
           + +A + S +T   A+ G +++         I+E +  A++ +  L  QS  I  IV TI
Sbjct: 268 ASVAFEISQQTDVSAQRGADVVQNTVQTMRKISEEMQTASSGIEALGKQSLLINSIVQTI 327

Query: 331 NKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLT 390
             IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA  TS AT EI ++V++N  L 
Sbjct: 328 GGIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAGRTSAATEEIVSVVQQNQTLA 387

Query: 391 EQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNIVDE 438
           +++ + M   + +  +   +  +  ++I +IQ  A+ V   V    ++
Sbjct: 388 DEAVRGMANSRTQAEQGLVLANEAGAVIVEIQEGAKQVVGAVGRFANQ 435



 Score =  103 bits (258), Expect = 8e-27
 Identities = 49/120 (40%), Positives = 71/120 (59%)

Query: 19  VEQHNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPET 78
           VE    +S  + AL R+ A IEF+  G++L AN  FL  MGY+  ++ G+HH +FCDP  
Sbjct: 136 VETAAENSAFIQALLRSTAVIEFNLSGQVLTANDQFLRGMGYSLAQIKGKHHSMFCDPAE 195

Query: 79  VNSLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVT 138
            +   Y +FW  L +G+     F R+  +G  +W+EATY PV +  G +YKV+K A  VT
Sbjct: 196 TSQASYREFWAMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDAQGKLYKVVKFATMVT 255



 Score = 41.6 bits (96), Expect = 5e-08
 Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 154 LDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENPNFWREL-- 211
           +D     +  +    I  AN+N L   GY LE+++GK          Y +  + +R L  
Sbjct: 27  MDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQVLGKDLDHLVPT--YVKQLDCYRSLKV 84

Query: 212 --ARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATKE 269
              +GE     +      G+ +W+ A + P+ ++ G +  +  + SD+T Q+++  A   
Sbjct: 85  AVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQGRLMTLQCYGSDIT-QIVETAAENS 143

Query: 270 ASQMAQQTSAETVRVAESGREMIDAAATIASGITESIA 307
           A   A   S   +    SG +++ A      G+  S+A
Sbjct: 144 AFIQALLRSTAVIEFNLSG-QVLTANDQFLRGMGYSLA 180