Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  112 bits (280), Expect = 3e-29
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 28/209 (13%)

Query: 250 VVKFASDVTDQVLKAHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGA 309
           V +  + V +    A +T EAS+   QTS +     +  R+ ++A  T+++ I+ S    
Sbjct: 310 VNEMTAAVEEVARNAMSTSEASR---QTSTDAAAGRDQARDAVNAINTVSAEISSS---- 362

Query: 310 NALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLA 369
             ++ +L+ + + I Q++  I  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA
Sbjct: 363 TTMVEELAGRVREIGQVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 422

Query: 370 SNTSQATSEIDNIV---------------------KRNSQLTEQSGQTMEQIQAKVTEFN 408
           + T  +T EI+ ++                          L + +GQ++E+I   V E N
Sbjct: 423 ARTQASTGEIETMIGSVQASADQAVRAMANSRTLTSNTQTLAQATGQSLERIAQSVAEIN 482

Query: 409 HMLQQTQSLIEQIQHAAENVQKTVSNIVD 437
                  +  E+  H A  V + + NI D
Sbjct: 483 DRNMLIATASEEQSHVAREVDRNLVNIQD 511



 Score = 28.1 bits (61), Expect = 7e-04
 Identities = 17/129 (13%), Positives = 50/129 (38%)

Query: 293 DAAATIASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAG 352
           D A  +   +++      + +  +SS + ++      +N + E+++   +    E  +A 
Sbjct: 248 DEAGMMLVALSDMQDNLKSTIGQISSAADQLASAAEELNAVTEESSRGLIRQNDEIQQAA 307

Query: 353 EYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQ 412
                     +EV   A +TS+A+ +              +   +  + A+++    M++
Sbjct: 308 SAVNEMTAAVEEVARNAMSTSEASRQTSTDAAAGRDQARDAVNAINTVSAEISSSTTMVE 367

Query: 413 QTQSLIEQI 421
           +    + +I
Sbjct: 368 ELAGRVREI 376