Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., PAS domain-containing methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  264 bits (675), Expect = 5e-75
 Identities = 149/397 (37%), Positives = 230/397 (57%), Gaps = 5/397 (1%)

Query: 29  VSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFW 88
           V+A  R+ A IEF+  G I  AN  FL  +GYT +E+ G+HH +F +P   +S  Y +FW
Sbjct: 138 VAAANRSQAVIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFW 197

Query: 89  KSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQA 148
            +L +G+ Q   + R+ K G  IW++A+Y P+ +  G   KV+K A DVT+ K+     A
Sbjct: 198 AALNRGEYQAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNADMA 257

Query: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCD--DRFYKENPN 206
               ++ +S A+I+F+ DGT+  AN+NFL+A GY L EI G+ H MF D  +R       
Sbjct: 258 GQIAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYRE 317

Query: 207 FWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHA 266
           FW  L RGE+++  + R  + G++++++A+YNPI +  G   +VVKFA+DVT QVL    
Sbjct: 318 FWASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQVLARIG 377

Query: 267 TKEASQMAQQTSAETVRVAESGREMIDAAA---TIASGITESIAGANALMTDLSSQSQRI 323
            +    M +  +A    +  S RE+    A     A+G  + ++ A+A    L+S +Q +
Sbjct: 378 NERVRGMMETVAAGAEELNTSVREISSTMAKSRETAAGAVDRVSNADAQAQRLTSAAQSM 437

Query: 324 TQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIV 383
           + IV  IN I  Q NLLALNA IE+ARAGE GRGFAVVA EV++LA+   QAT +I   +
Sbjct: 438 SGIVELINNITGQINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGEEI 497

Query: 384 KRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQ 420
              + ++      +  I+  + E +  +  T + +E+
Sbjct: 498 SSLNSISGDVAMALNAIKQAINEVSEYVTSTAAAVEE 534