Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., PAS domain-containing methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  253 bits (647), Expect = 8e-72
 Identities = 150/408 (36%), Positives = 230/408 (56%), Gaps = 11/408 (2%)

Query: 21  QHNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVN 80
           Q   D+  ++A+ R  A IEF   G +L AN  FL+AM Y+  E+ G+HH +F +P    
Sbjct: 131 QSLEDAGKLAAIGRAQAVIEFAMDGTVLTANDNFLAAMEYSLGEIKGRHHSMFVEPSVRE 190

Query: 81  SLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKA 140
           S +Y +FW  L +G+     F R+ K G  +WI A+Y P+ +  G  +KV+K A DVT  
Sbjct: 191 SSDYREFWARLNRGEYFPGEFKRIGKGGKEVWILASYNPILDARGKPFKVVKYATDVTAQ 250

Query: 141 KITADKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCD--D 198
           K+     +    ++ +S A+I+F+ DGT+ +AN+NFL A GY L EI G+HH MF D  +
Sbjct: 251 KLKNADFSGQIDAIRKSQAVIEFSIDGTVLDANDNFLHALGYSLGEIKGRHHSMFIDPAE 310

Query: 199 RFYKENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVT 258
           R       FW  L RG++++G + R  + G+++W++A+YNPI +  G   +VVK+A+D T
Sbjct: 311 RESAAYRAFWAALGRGDYQAGEYKRIGKGGREVWIQASYNPILDLNGRPFKVVKYAADTT 370

Query: 259 DQVLKAHATKEASQMAQQTSAETVRVAESGREMIDA---AATIASGITESIAGANALMTD 315
            QVL     +    M +  +A    +  S RE+ +A   +   A      +  A++    
Sbjct: 371 RQVLTRLGNERVRAMMESVAAGAEELNASVREISEAMTKSRQTAMNAVGEVDAADSQANQ 430

Query: 316 LSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQA 375
           L+  +Q ++ IV  IN I  Q NLLALNA IE+ARAGE GRGFAVVA EV++LA+   QA
Sbjct: 431 LNDAAQAMSGIVELINHITGQINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQA 490

Query: 376 TSEIDNIVKRNSQLTEQSGQ---TMEQIQAKVTEFNHMLQQTQSLIEQ 420
           T +I   +   S LT  SG     + +I+  +   +  +  T + +E+
Sbjct: 491 TDKIGTEI---SNLTSVSGDVVGALGKIKNAIQNVSEYVSSTAAAVEE 535



 Score =  203 bits (516), Expect = 1e-56
 Identities = 103/244 (42%), Positives = 153/244 (62%), Gaps = 2/244 (0%)

Query: 22  HNHDSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNS 81
           H+H + +++AL R+ A IEFD  G ++DAN  FL+A+GY+  E+ G+HH++F DP   +S
Sbjct: 10  HDHAAAMLAALNRSQAVIEFDLDGNVIDANDNFLTALGYSLPEIKGKHHRMFVDPSEHDS 69

Query: 82  LEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAK 141
             Y +FW +L  GQ Q   FHR+ K G  +WI+A+Y P+ ++ G    V+K A D+T AK
Sbjct: 70  TAYREFWTALRAGQYQAGEFHRIGKGGREVWIQASYNPILDKNGKPTGVVKFAADITAAK 129

Query: 142 ITADKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDD--R 199
             + + A    ++ R+ A+I+F  DGT+  AN+NFL A  Y L EI G+HH MF +   R
Sbjct: 130 TQSLEDAGKLAAIGRAQAVIEFAMDGTVLTANDNFLAAMEYSLGEIKGRHHSMFVEPSVR 189

Query: 200 FYKENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTD 259
              +   FW  L RGE+  G F R  + G+++W+ A+YNPI +  G   +VVK+A+DVT 
Sbjct: 190 ESSDYREFWARLNRGEYFPGEFKRIGKGGKEVWILASYNPILDARGKPFKVVKYATDVTA 249

Query: 260 QVLK 263
           Q LK
Sbjct: 250 QKLK 253