Pairwise Alignments
Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 523 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4
Score = 115 bits (289), Expect = 2e-30
Identities = 65/182 (35%), Positives = 104/182 (57%)
Query: 249 QVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAG 308
Q + A+ V + + + Q A + + + AE G E++ G+ + ++
Sbjct: 273 QTSQAATAVEEMSASFNEVSQNIQHAAEEMSMSHEAAEKGHELLVEVIQAIKGLHQEVSN 332
Query: 309 ANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSL 368
+A++ + SQ I +++ I IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR L
Sbjct: 333 FSAVVASIEQDSQEINEVLEVIRGIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRQL 392
Query: 369 ASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENV 428
+S TS++TS I+ IV + T ++ QTM+ Q + + QQ + E+++ + + +
Sbjct: 393 SSRTSESTSHIEAIVSKFRDSTLKASQTMQAGQRQAQHSVGLAQQVDASFEELRASIDKI 452
Query: 429 QK 430
+
Sbjct: 453 NQ 454
Score = 47.0 bits (110), Expect = 1e-09
Identities = 56/298 (18%), Positives = 118/298 (39%), Gaps = 33/298 (11%)
Query: 167 GTIKEANENFLKATGYRLEEIVGKHHRMFCD-DRFYKENPNFWRELARGEFKSGLFHRRT 225
G IK AN F + + + +E+ + H + D + W L +G+ G+ R
Sbjct: 28 GKIKYANAGFTQVSEFTQDELYRQPHNIVRHPDMPPAAFESMWSRLKQGKPWIGIVKNRA 87
Query: 226 RHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRVA 285
+ G W+ A P+F QV ++ S V + +A + + + + R
Sbjct: 88 KSGDHYWVNAYVAPVFEGG----QVHEYQS-VRRKATQAQIDNAQALYGELNAGKRPRAL 142
Query: 286 ESGR----EMIDAAATIASGITESIAGANALMTDLSSQS---QRITQIVTTINKIAEQTN 338
++ R + + ++ G+ ++AG + L+ L + ++ I+ N + EQ +
Sbjct: 143 KAARLGFGKRLGLVLLLSLGVGVALAGYSPLLALLLATGLGLGGLSLILKPFNALVEQAS 202
Query: 339 LL---ALNAAIEAARAGEYGR-GFAV----------------VADEVRSLASNTSQATSE 378
+ L A+ R E G+ FA+ A+ ++ L+ + ++ S
Sbjct: 203 GIIDDPLATAVYCGRQDELGKLSFALQYLLTETGGAVGRMADSAESIQELSVSLNETISH 262
Query: 379 IDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNIV 436
+ SQ T Q+ +E++ A E + +Q + AAE + + ++
Sbjct: 263 TRDRADSQSQQTSQAATAVEEMSASFNEVSQNIQHAAEEMSMSHEAAEKGHELLVEVI 320
Score = 45.4 bits (106), Expect = 4e-09
Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 35/370 (9%)
Query: 42 DPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFWKSLAQGQAQRKMF 101
D +GKI ANA F +T++E+ Q H I P+ + + W L QG+ +
Sbjct: 25 DLKGKIKYANAGFTQVSEFTQDELYRQPHNIVRHPD-MPPAAFESMWSRLKQGKPWIGIV 83
Query: 102 HRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQAAVFHSLDRSSAMI 161
K G W+ A PV G V++ V T+A+I D A++ L+
Sbjct: 84 KNRAKSGDHYWVNAYVAPV-FEGGQVHEYQSVRRKATQAQI--DNAQALYGELNAGKR-- 138
Query: 162 QFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENPNFWRELARGEFKSGLF 221
+K A F K G L +G +P LA G GL
Sbjct: 139 ----PRALKAARLGFGKRLGLVLLLSLG------VGVALAGYSPLLALLLATGLGLGGL- 187
Query: 222 HRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAET 281
L L+ + +G++ + A Q + + +T
Sbjct: 188 --------SLILKPFNALVEQASGIIDDPLATAVYCGRQDELGKLSFALQYLLTETGGAV 239
Query: 282 VRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLA 341
R+A+S + + + ++ I+ + A+ SQSQ+ +Q T + +++ N ++
Sbjct: 240 GRMADSAESIQELSVSLNETISHTRDRAD-------SQSQQTSQAATAVEEMSASFNEVS 292
Query: 342 LN---AAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTME 398
N AA E + + E + EV Q S +V Q +++ + +E
Sbjct: 293 QNIQHAAEEMSMSHEAAEKGHELLVEVIQAIKGLHQEVSNFSAVVASIEQDSQEINEVLE 352
Query: 399 QIQAKVTEFN 408
I+ + N
Sbjct: 353 VIRGIAEQTN 362
Score = 27.3 bits (59), Expect = 0.001
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 248 TQVVKFASDVTDQVLKAHATKEASQ--------MAQQTSA--ETVRVA-ESGREMIDAAA 296
+ + S D LKA T +A Q +AQQ A E +R + + +M DA A
Sbjct: 401 SHIEAIVSKFRDSTLKASQTMQAGQRQAQHSVGLAQQVDASFEELRASIDKINQMSDANA 460
Query: 297 T-------IASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLA 341
+AS I++SI N L SQ+Q + + +++ +T+ L+
Sbjct: 461 AAMSQQTAVASEISQSIQLINELALASLSQTQAAAERGGQVERLSAKTHHLS 512