Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  116 bits (291), Expect = 2e-30
 Identities = 74/173 (42%), Positives = 104/173 (60%), Gaps = 10/173 (5%)

Query: 238 NPIFNDAGVVTQVVKFASDVTDQVLKA---------HATKEASQMAQQTSAETVRVAESG 288
           N I +   V++  +   ++ TDQV+ A            +  +Q+A+ T A T  VA + 
Sbjct: 291 NAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQ 350

Query: 289 REMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEA 348
           R  +DA+    + + E I  A   +  LS QSQ+I  +++ I  IAEQTNLLALNAAIEA
Sbjct: 351 R-CVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEA 409

Query: 349 ARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQ 401
           ARAGE GRGFAVVADEVRSLAS T  +T EI+ ++    +L  Q+ +TM++ Q
Sbjct: 410 ARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQ 462



 Score = 31.2 bits (69), Expect = 9e-05
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 12/165 (7%)

Query: 277 TSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQ-RITQIVTTINKIAE 335
           T A    +  +   M+     +A  + +   G   L   LS + +  I Q+    N   +
Sbjct: 211 TGATAFVIMVAAHRMVVPIKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVD 270

Query: 336 QTNLLALNAAIEAARAGEYGRGF----AVVADEVRSLASNTSQATSEIDNIVKRNSQLTE 391
           +   +  + A   A+             V++ ++ S  + T Q  + I  +    S++ +
Sbjct: 271 KLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQ 330

Query: 392 QSGQTMEQIQAKVTEFNHM-------LQQTQSLIEQIQHAAENVQ 429
            + Q  E  QA   +  +        L++  +L+EQI HAA +++
Sbjct: 331 NTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQINHAAGSIK 375



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 29/184 (15%)

Query: 239 PIFNDAGVVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRVAESGREMIDAAATI 298
           PI N A  +  + K   D+T + L      E +Q+ +  +    ++     ++  A A +
Sbjct: 228 PIKNMADNLNDIAKGEGDLTKR-LSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKV 286

Query: 299 ASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGF 358
            +           + + L S +    Q+VT I +++   + +A N               
Sbjct: 287 KTAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTT------------- 333

Query: 359 AVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLI 418
                    +A  T  AT ++ N  +      E+    MEQI       NH     +SL 
Sbjct: 334 --------QVAEATQAATGDVANAQRCVDASLEEIAALMEQI-------NHAAGSIKSLS 378

Query: 419 EQIQ 422
           EQ Q
Sbjct: 379 EQSQ 382



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 323 ITQIVTTINKIAEQTNLLALNAAIEAA-RAGEYGRGFAVVADEVRSLASNTSQATSEI-- 379
           I  +   +N IA+    L    +++      + GR F +  D+++ +  + + AT+++  
Sbjct: 229 IKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKT 288

Query: 380 ------DNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVS 433
                 D     +SQL   + +T +Q+   +TE +    +      Q+  A +     V+
Sbjct: 289 AANAIHDQTKVMSSQLLSHNNET-DQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVA 347

Query: 434 N 434
           N
Sbjct: 348 N 348