Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  108 bits (270), Expect = 4e-28
 Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 21/183 (11%)

Query: 274 AQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVTTINKI 333
           A   +  T R AESG E++    T  S +          M DL  Q++ I QI+  I+ I
Sbjct: 362 AADIAENTRRKAESGAEIVGRVVTGISEVQSQSVALKHDMEDLGRQAEAIGQIMNVISDI 421

Query: 334 AEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVK--------- 384
           A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA  T QAT+E+ N ++         
Sbjct: 422 ADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMQATTEVGNAIRGVQGGTRKN 481

Query: 385 ------------RNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTV 432
                         +Q    SG+ + +I   V   +  ++   +  EQ   A+E + K+V
Sbjct: 482 MDNVDRSVKTIEEATQAARLSGEALREIVKMVDTVSDQVRGIATASEQQSAASEEINKSV 541

Query: 433 SNI 435
             +
Sbjct: 542 EQV 544



 Score = 44.7 bits (104), Expect = 8e-09
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 16/201 (7%)

Query: 229 QDLWLEATYNPIFNDAGVVTQVVKFASDVTDQ--VLKAHATKEASQMAQQTSAETVRVAE 286
           Q + L+     +   A  + Q++   SD+ DQ  +L  +A  EA++  +      V VA+
Sbjct: 393 QSVALKHDMEDLGRQAEAIGQIMNVISDIADQTNLLALNAAIEAARAGEAGRGFAV-VAD 451

Query: 287 SGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAI 346
             R++ +      + +  +I G            + +  +  ++  I E T    L+   
Sbjct: 452 EVRKLAEKTMQATTEVGNAIRGVQG------GTRKNMDNVDRSVKTIEEATQAARLSG-- 503

Query: 347 EAARAGEYGRGFAVVADEVRSLASNTSQ---ATSEIDNIVKRNSQLTEQSGQTMEQIQAK 403
           EA R  E  +    V+D+VR +A+ + Q   A+ EI+  V++ S ++ ++ Q M +    
Sbjct: 504 EALR--EIVKMVDTVSDQVRGIATASEQQSAASEEINKSVEQVSAISAETAQAMREAATA 561

Query: 404 VTEFNHMLQQTQSLIEQIQHA 424
           V E  +  Q  + L++ ++ A
Sbjct: 562 VQELANQSQVLKRLVDDLKRA 582



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 334 AEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQS 393
           A+Q  L A  A  +A RA     G    A ++  +    S A+ E+   ++++ +  E+ 
Sbjct: 277 AQQATLEAEEARRQAERAK--AEGMLQAAVKLEGVVEVLSSASEELSAQIEQSDRGAEEQ 334

Query: 394 GQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQK 430
            + + +    + E N  + +      Q    AEN ++
Sbjct: 335 ARRVGETATAMEEMNATVLEVARNAGQAADIAENTRR 371