Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  114 bits (284), Expect = 1e-29
 Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 10/173 (5%)

Query: 238 NPIFNDAGVVTQVVKFASDVTDQVLKA---------HATKEASQMAQQTSAETVRVAESG 288
           N I +   V+++ +   ++ TDQV+ A            +  +Q+A+ T A T  VA + 
Sbjct: 291 NAIHDQTKVMSRQLISHNNETDQVVTAITEMSATASEVAQNTTQVAEATHAATGDVANAQ 350

Query: 289 REMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEA 348
           R  +DA+    S +   I  A + +  LS QSQ+I  +++ I  IAEQTNLLALNAAIEA
Sbjct: 351 R-CVDASLEEISALMAQINNAASNIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEA 409

Query: 349 ARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQ 401
           ARAGE GRGFAVVADEVR+LAS T  +T EI+ ++    +L   + +TME+ Q
Sbjct: 410 ARAGEQGRGFAVVADEVRNLASRTQSSTLEINEMLSELHKLVSLAVKTMEESQ 462



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 31/185 (16%)

Query: 239 PIFNDAGVVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRVAESGREMIDAAATI 298
           PI N A  +  + K   D+T ++    A K   ++AQ        +  S    +D   TI
Sbjct: 228 PIKNMADNLNDIAKGEGDLTKRL----AVKGDDEIAQ--------LGRSFNLFVDKLQTI 275

Query: 299 ASGITESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIE-AARAGEYGRG 357
              +  + A        +  Q++ +++ + + N   +Q     + A  E +A A E  + 
Sbjct: 276 IGDVAHATAKVKTAANAIHDQTKVMSRQLISHNNETDQV----VTAITEMSATASEVAQN 331

Query: 358 FAVVADEVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSL 417
              VA+   +   + + A   +D               ++E+I A + + N+     QSL
Sbjct: 332 TTQVAEATHAATGDVANAQRCVD--------------ASLEEISALMAQINNAASNIQSL 377

Query: 418 IEQIQ 422
            EQ Q
Sbjct: 378 SEQSQ 382



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 32/192 (16%), Positives = 76/192 (39%), Gaps = 8/192 (4%)

Query: 250 VVKFASDVTDQVL-KAHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAG 308
           V  + + VT+Q++ K++A    + +    +A  + V  + + M+     +A  + +   G
Sbjct: 185 VEDYRTTVTEQMIDKSYAILLIALLLAAITAPVILV--TAQRMVTPIKNMADNLNDIAKG 242

Query: 309 ANALMTDLSSQSQ-RITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGF----AVVAD 363
              L   L+ +    I Q+  + N   ++   +  + A   A+             V++ 
Sbjct: 243 EGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIGDVAHATAKVKTAANAIHDQTKVMSR 302

Query: 364 EVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQH 423
           ++ S  + T Q  + I  +    S++ + + Q  E   A   +  +  +   + +E+I  
Sbjct: 303 QLISHNNETDQVVTAITEMSATASEVAQNTTQVAEATHAATGDVANAQRCVDASLEEISA 362

Query: 424 AAENVQKTVSNI 435
               +    SNI
Sbjct: 363 LMAQINNAASNI 374



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 303 TESIAGANALMTDLSS--QSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAV 360
           T+ + G  A + D+ +  +  R T     I+K      +  L AAI A           V
Sbjct: 168 TDWMLGTGAYIDDIDAVVEDYRTTVTEQMIDKSYAILLIALLLAAITAP----------V 217

Query: 361 VADEVRSLASNTSQATSEIDNIVKRNSQLTEQSG-QTMEQIQAKVTEFNHMLQQTQSLIE 419
           +    + + +        +++I K    LT++   +  ++I      FN  + + Q++I 
Sbjct: 218 ILVTAQRMVTPIKNMADNLNDIAKGEGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIG 277

Query: 420 QIQHAAENVQKTVSNIVDE 438
            + HA   V KT +N + +
Sbjct: 278 DVAHATAKV-KTAANAIHD 295