Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  116 bits (290), Expect = 2e-30
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 3/166 (1%)

Query: 266 ATKEASQMAQQTSAETVRVAE---SGREMIDAAATIASGITESIAGANALMTDLSSQSQR 322
           A KE ++ A+Q+SAET    +   +G + I+   +    +++ I+ A+  +  L+  + +
Sbjct: 275 AVKEVARNAEQSSAETQEANQQVNAGSKDIETTVSAIDVLSDEISAASDAVNILNENASK 334

Query: 323 ITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNI 382
           I ++V+TIN I++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA  T  AT EI ++
Sbjct: 335 IDEVVSTINAISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSM 394

Query: 383 VKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENV 428
           ++   Q +    Q M +  ++ +E    + QT   +E I H +  V
Sbjct: 395 IESLQQGSRNLTQVMSRTVSQASEGKQHVLQTGKDLESIAHHSSRV 440



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 11/169 (6%)

Query: 254 ASDVTDQVLKAHA-TKEASQMAQQTSAETVRVAESGRE---MIDAAATIASGITESIAGA 309
           AS + + V   +A +++ + +A   + E  R  E GR    + D   T+A     +    
Sbjct: 332 ASKIDEVVSTINAISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEI 391

Query: 310 NALMTDLSSQSQRITQIVT-TINKIAE------QTNLLALNAAIEAARAGEYGRGFAVVA 362
            +++  L   S+ +TQ+++ T+++ +E      QT     + A  ++R  E     A  A
Sbjct: 392 KSMIESLQQGSRNLTQVMSRTVSQASEGKQHVLQTGKDLESIAHHSSRVFEMSVLIATSA 451

Query: 363 DEVRSLASNTSQATSEIDNIVKRNSQLTEQSGQTMEQIQAKVTEFNHML 411
           +E  ++A+  +    EI N      Q   QS    +++QA   + + ++
Sbjct: 452 EEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELQATAGQLDQLM 500