Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  212 bits (540), Expect = 3e-59
 Identities = 160/565 (28%), Positives = 277/565 (49%), Gaps = 55/565 (9%)

Query: 3   WFNNLSITQKMIALVGCLLALTLMVST---YSITKMKRVAVEIEAIAHDNLPLAKLMTDM 59
           W +N+ ++ K+    G +L L L++++   Y++  +    V+IE IA     ++    D+
Sbjct: 4   WISNIRVSAKLSLGFGLVLGLALLLASTGWYAVATLTDRGVKIEKIAQ----ISDYTKDL 59

Query: 60  TVHQLE-GAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIE 118
            + +L  GA                   Q N YQ  L ++++            L+S  +
Sbjct: 60  RISRLRLGA-----------------NPQPNAYQP-LQKILDNLAAH-------LQSIRD 94

Query: 119 HTISPSIRSYLANLEQDLDSLGREHEEFERKLNELLNEL-RSGREVKLLVADAEQIEQLQ 177
           H  SP        ++Q+L    ++     R+  +LL +L +   +   +     Q+  L 
Sbjct: 95  HFTSP--------IDQELI---QQQNTSVREYGQLLLDLAKPNADQVSIYKRMGQLGDLL 143

Query: 178 ISLDQRLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVM 237
           +   Q+LID       A   S  V        L G++  +A  +L G +  +  ++QIV 
Sbjct: 144 LDTTQKLIDSQNAKRDADAASAKV--------LLGLV--AAMTLLLGALAAWIITQQIVN 193

Query: 238 AIARARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIAST 297
            +    +  N +A G+ S+  +V   DE+GQL + +  M  +L  ++  +      +AS 
Sbjct: 194 PLQYTLQAVNRIARGDLSEPVQVNRRDELGQLQSGLQQMMLNLHELIEGIRSGVIQVASA 253

Query: 298 VTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYS 357
             QL++  E     V  Q+  T+ V +AM++M  T+  VA  AEE+S A + A + A   
Sbjct: 254 AEQLSAVTEQTNAGVNNQKTETDHVATAMSEMTATVQNVARDAEEASTAASAADQQASEG 313

Query: 358 CDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEA 417
             ++ +      +L     QS   +  L+  + +I   + V++ +++QTNLLALNAAIEA
Sbjct: 314 EQIVNEAIAQIKRLAEELNQSADAVRHLQEQSEKIGGVLDVIKAVAQQTNLLALNAAIEA 373

Query: 418 ARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESF 477
           ARAGE GRGFAVVADEVR+LA R+Q++T EI+ L+  +     +    ++SS    E S 
Sbjct: 374 ARAGEAGRGFAVVADEVRSLALRTQRSTEEIESLVAGVQSGTHAVASGMESSQLLGESSV 433

Query: 478 SSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQ 537
                A   L++I   +  + + N Q+A A+E+QS  A+EI+ ++ ++RD  E    + +
Sbjct: 434 EFTHRAVIALENITSKVSIIQAMNQQIATAAEQQSAVAEEINRSVINVRDISEQTASTCE 493

Query: 538 ETAQASEELAQQAQGLKLLMGRFVI 562
           ETA +S ELA+    L+ L+GRF +
Sbjct: 494 ETASSSTELARLGHELERLVGRFKV 518