Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  219 bits (557), Expect = 3e-61
 Identities = 153/560 (27%), Positives = 274/560 (48%), Gaps = 32/560 (5%)

Query: 6   NLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPLAKLMTDMTVHQLE 65
           N++++Q+     G +  + L++  ++I +M ++  E   ++ + LP    + D+  H L 
Sbjct: 5   NMNVSQRSALGFGLIGLIVLLLGLFAILQMGKIRSEAAKLSDEWLPSIVALGDLNQHTLR 64

Query: 66  GAI-TLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPS 124
             I TL  +     +E ++               + +F+ E +      + +++H   P 
Sbjct: 65  TRIHTLRLIIDRTRVEENRAT-------------LARFRNELSSLEDAYQRTVDH---PQ 108

Query: 125 IRSYLANLEQDLDSLGREHEEFERKLNELLNELRSGREVKLLVADAEQIEQLQISLDQRL 184
            R    N +       R    F+  L+E++     GR  + +     ++      L++  
Sbjct: 109 ERELFQNYQ-------RARTAFDEVLSEIVRLEGQGRIEEAVEVVGSRLNTAGTGLNEA- 160

Query: 185 IDILRKIEQATEQSVLVTEQE----EREALWGMIYLSAFAILFGLILGFAFSKQIVMAIA 240
             + R      EQS L         +    W MI     A+L  ++L + F++ IV  + 
Sbjct: 161 --VARMTAFNNEQSALSAASAAAIFQSSQAW-MIGTIVLAVLLTVVLAWIFTRSIVQPLQ 217

Query: 241 RARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQ 300
           +A  +A  +A G+ ++   +   DE  +L+T++ +M + L   +  +   ++ +AS   Q
Sbjct: 218 QAVSIAEVVASGDLTRHIDIVGRDEPARLLTALRSMQERLRGTIQSISHSSSQLASAAEQ 277

Query: 301 LASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDV 360
           L    E + + + QQ    EQ  +A+ +M   + EVA +A  +S A+  +   A++  + 
Sbjct: 278 LNVVTEDSTRGMNQQSHEIEQAATAVNEMTAAVDEVARNAVATSEASRDSDATAQHGRNQ 337

Query: 361 LGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARA 420
           + +T     QL  +  Q+   +  L A  R I   + V+  I+EQTNLLALNAAIEAARA
Sbjct: 338 VIRTVDSIGQLAGDVTQTSAEVERLAAQVRDISKVLDVIRSIAEQTNLLALNAAIEAARA 397

Query: 421 GEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSI 480
           G+ GRGFAVVADEVRALA R+QQ+T EI+ +I  + +    A + +  S+ +   +    
Sbjct: 398 GDAGRGFAVVADEVRALAHRTQQSTQEIEQMIGDVHQGTDRAVQAMQVSNERARTTLDLA 457

Query: 481 TAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETA 540
            AA + L+ I  A+ +++  N  +A+ASEEQ+  A E+  N+ +IRD        A +++
Sbjct: 458 RAAGEALEEIAAAISQISERNLVIASASEEQAQVAREVDRNLVNIRDLSLQSSAGASQSS 517

Query: 541 QASEELAQQAQGLKLLMGRF 560
            AS+ELA+ A GL  L+G F
Sbjct: 518 AASQELARLAVGLNGLVGGF 537