Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  196 bits (499), Expect = 1e-54
 Identities = 122/344 (35%), Positives = 200/344 (58%), Gaps = 3/344 (0%)

Query: 220 AILFGLILGFAFSKQIVMAIARARKLANEMAE-GNFSKRAKVTTG--DEIGQLITSMNTM 276
           A L GL LG A +     A+    +LA +  + G+      + TG  DEIGQ+  +M  +
Sbjct: 177 ATLAGLALGGAAAVAAATALLPLSRLARQARQVGDNPVSQLIYTGRRDEIGQIEFAMKML 236

Query: 277 AQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEV 336
                 +VG + D +  ++     L  +   + +S  +QQ  T+ + +A+ QM+ ++ EV
Sbjct: 237 ETEAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEV 296

Query: 337 ASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFV 396
           A +A+ ++   ARA   A    +V+G+T +  ++L A+ QQ+ ++I +LE  +++I   +
Sbjct: 297 ALNAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVL 356

Query: 397 LVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLV 456
            V+ GI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASR+  AT +I+ +I +L 
Sbjct: 357 DVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQ 416

Query: 457 ERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAAD 516
             A+ A  ++  S  Q E S S    A+  L  IN  + E+++ ++Q+AAA ++QS   +
Sbjct: 417 TGAREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGE 476

Query: 517 EISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMGRF 560
           EIS ++  IR + +  + S   + + +  +A  A G+  L+ +F
Sbjct: 477 EISQSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQF 520