Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  203 bits (517), Expect = 1e-56
 Identities = 112/297 (37%), Positives = 180/297 (60%)

Query: 264 DEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVT 323
           DE GQ+  +M  +      +VG + D +  ++    +L  + +S+ +S  +QQ+ T+QV 
Sbjct: 226 DEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVA 285

Query: 324 SAMAQMAITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIV 383
           +A+ QMA ++ EVA++A+ ++ A +RA        +V+ +T     QL  + QQ+  +I 
Sbjct: 286 TAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIH 345

Query: 384 ELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQ 443
           ELEA +  I   + V+ GI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASR+QQ
Sbjct: 346 ELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQ 405

Query: 444 ATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQ 503
           +T EI G+I  L   A+ A +++  S  Q  +S      A + L  IN  + E++  + Q
Sbjct: 406 STQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQ 465

Query: 504 VAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMGRF 560
           +AAA E+QS  ++ I+ N+  IR   +  + +   + Q++  +A+ A  +++L+ +F
Sbjct: 466 IAAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522