Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  202 bits (513), Expect = 5e-56
 Identities = 112/346 (32%), Positives = 194/346 (56%), Gaps = 3/346 (0%)

Query: 218 AFAILFGLILGFAFS---KQIVMAIARARKLANEMAEGNFSKRAKVTTGDEIGQLITSMN 274
           A  ++ GL+L +AF    + + + I     +   + EG+ S R  V + DE+  +   +N
Sbjct: 327 AMCVIMGLLLLYAFCSIYRALRLTIDSLLGVTRRLGEGDLSARVAVVSKDEVADIANGLN 386

Query: 275 TMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITIT 334
            MA + +  +  +   +  +    ++L +S    K+S+  QQA TEQV +A+ +M  ++ 
Sbjct: 387 LMADAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNAQQAETEQVATAINEMTASVA 446

Query: 335 EVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIES 394
           +VA + E ++ A   A   +R    ++ +  +    L    + S Q +  L   ++ I  
Sbjct: 447 DVAQNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEEVELSAQKVQALALHSQSIGG 506

Query: 395 FVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQT 454
            + V+  I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR LASR+Q +T EI+G+IQ 
Sbjct: 507 VIQVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTEEIRGIIQQ 566

Query: 455 LVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAAASEEQSVA 514
           L     +A + + +  ++     S+ + A   L SI+  +  +   NTQ+A+A+ +Q   
Sbjct: 567 LQSATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGVERIVEMNTQIASAAVQQHAV 626

Query: 515 ADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMGRF 560
           +++I+ N+ +IR++  T+ML     A  ++ELA+ A  ++ ++ RF
Sbjct: 627 SEDINRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMRNVVARF 672