Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  213 bits (543), Expect = 1e-59
 Identities = 164/568 (28%), Positives = 281/568 (49%), Gaps = 42/568 (7%)

Query: 6   NLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPLAKLMTDMTVHQLE 65
           N++I  +       +  L L++  +++++M ++    E +A  N+P  K +        E
Sbjct: 5   NMNIAPRAFLGFAMIGTLMLILGVFALSQMSKIRSATEVLADSNVPSIKSLDRFA----E 60

Query: 66  GAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPSI 125
            +I L  +     +      QQ+     +LM + NK   +   ++ + E  I    +P  
Sbjct: 61  VSIRLRVLSYRLLVNRDPETQQKT---IELMAMRNK---QITDAQAVYEKLIS---TPDE 111

Query: 126 RSYLANLEQDLDSLGREHEEFERKLNELLNELRSGREVKLLVADAEQIEQLQISLDQRLI 185
           R    NL      L  ++ + E +L  L                A  I++LQ  L+  ++
Sbjct: 112 R----NLYSQYVQLLGQYRQLEDRLKTLTR--------------ANNIDELQGLLNNEMV 153

Query: 186 D-------ILRK-IEQATEQSVLVTEQE--EREALWGMIY-LSAFAILFGLILGFAFSKQ 234
                   +LRK ++  T Q   V EQ   E ++ + M+  L   A L  L+  +   K 
Sbjct: 154 SNSDQMNVVLRKLVDINTAQLNEVKEQASIEYDSAFNMVIGLLIAATLLTLVFAWMLIKS 213

Query: 235 IVMAIARARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTI 294
           I   IA A   A  +A+GN ++   +   DE G+L+ +M TM   L   +  +   A  +
Sbjct: 214 ITTPIATALLAAETIAQGNLTRPISIDGTDEAGRLLLAMKTMQDKLRDTLQGISGSATQL 273

Query: 295 ASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENA 354
           AS   +L +  + + + + QQ    EQ  +A+ QM   + EVA +A  +S A+  A  +A
Sbjct: 274 ASAAEELNAVTDESARGLVQQNDEIEQAATAVNQMTSAVEEVARNATSTSQASRSAATSA 333

Query: 355 RYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAA 414
               D++ +T +   ++  + Q + ++I+ L   +R I   + V+ G+++QTNLLALNAA
Sbjct: 334 GDGRDLVQETVSAIERMSGDVQGTAELIISLANESRDIGKVLDVIRGLADQTNLLALNAA 393

Query: 415 IEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIE 474
           IEAARAGE GRGFAVVADEVRALA R+QQ+T EI+ +I ++    + A   + +S  + E
Sbjct: 394 IEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMISSIQTGTEQAVSSMRNSTERAE 453

Query: 475 ESFSSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIML 534
            + +    A + L++IN A+ E+   N  +A+A+EEQ+  A E+  N+ +IRD       
Sbjct: 454 STLNIAKGAGQALNTINSAVEEINERNMVIASAAEEQAQVAREVDRNLVNIRDLSAQSTN 513

Query: 535 SAQETAQASEELAQQAQGLKLLMGRFVI 562
            A +T+ AS EL++ A  L  ++ RF +
Sbjct: 514 GANQTSAASTELSRLAIDLNGMVARFAL 541