Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  211 bits (536), Expect = 8e-59
 Identities = 156/557 (28%), Positives = 279/557 (50%), Gaps = 24/557 (4%)

Query: 6   NLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPLAKLMTDMTVHQLE 65
           +LSI+++     G +  L + +  +S  ++  + V  + I  ++LP  +++ D+ +  L 
Sbjct: 5   SLSISRRASLCFGVITLLLIGLGAFSYVQIGHLRVAEQNIEENSLPSVQVVDDIQIALLH 64

Query: 66  GAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPSI 125
             +   R+  +         + + +   + +   + F Q+   S +   +  E   +  +
Sbjct: 65  ARLESIRMLASNDPSVHASAEAKVREAIEALRANSDFYQKHLLSGEADRAQFEEA-NNKM 123

Query: 126 RSYLANLEQDLDSLGREHEEFERKLNELLNELRSGREVKLLVADAEQIEQLQISLDQRLI 185
             Y+  L+Q +     +HE                R V L  A+ EQ   L+ +  Q  +
Sbjct: 124 GVYIDGLKQVVALDSADHE----------------RAVSL--ANGEQA--LKAAAYQEKL 163

Query: 186 DILR--KIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIARAR 243
             LR    E+A       T   +      MI L A A L  ++L  A ++ IV  I+ + 
Sbjct: 164 TALRGHNAEEAVVSGKDATAVYDHSVNVLMIVLIA-AFLLTVVLAIALTRSIVDPISASL 222

Query: 244 KLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLAS 303
           KLA ++A G+ +++  V+  DE  +L+T++NTM+ +L   + E+   +  +++   ++ S
Sbjct: 223 KLAEDIAAGDLTRQLSVSGSDEASRLMTALNTMSGNLRTTIHEISGASAQLSTAAVEMTS 282

Query: 304 SAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVLGK 363
             ES  +++QQQ +  EQ  +A+ +M+  + EVA +A  +S A  ++  +A      + +
Sbjct: 283 ITESADRTLQQQNSEIEQAATAVNEMSAAVEEVARNATSTSQAAQQSSLSADLGNQRVNE 342

Query: 364 TETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQ 423
           T T    L    + S   +  L    + I   + V+ GI+EQTNLLALNAAIEAARAGEQ
Sbjct: 343 TLTAMQNLTGLVEGSSAQVTALAGQAQDISKVLGVIRGIAEQTNLLALNAAIEAARAGEQ 402

Query: 424 GRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAA 483
           GRGFAVVADEVRALA R+Q +T E++ +I  +   + +  + +  S +++  +  +   A
Sbjct: 403 GRGFAVVADEVRALAHRTQTSTQEVEQMISAIQAGSSATVESMHKSTQEVHVTRKTAEDA 462

Query: 484 KKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQAS 543
            + L  I  ++LE+ + N Q+AAASE+Q+  A ++  ++  IRD         ++T  AS
Sbjct: 463 GESLRQITDSVLEINNRNLQIAAASEQQAHVARDVDRSLVSIRDLAVQSSEGTRQTLIAS 522

Query: 544 EELAQQAQGLKLLMGRF 560
            EL+Q A  L  L+ RF
Sbjct: 523 TELSQLAVNLNDLVLRF 539