Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  188 bits (477), Expect = 6e-52
 Identities = 113/349 (32%), Positives = 191/349 (54%), Gaps = 4/349 (1%)

Query: 212 GMIYLSAFAILFGLILGFAFSKQIVMAIARARKLANEMAEGNFSKRAKVTTGDEIGQLIT 271
           G++     AI+ G+++    ++ + +A+A A+++A     G+ ++    T+GDE GQL+ 
Sbjct: 224 GVVIAFLVAIMLGVLITRMITRPLAVAVASAQRIAG----GDLTQPIVSTSGDEAGQLLN 279

Query: 272 SMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAI 331
           +++ M   L + + ++   ++ +AS   +L++  + + + + +Q    +Q  +A+ QM  
Sbjct: 280 ALSDMQGGLKNTIQQIASASDQLASAAEELSAVTDESTRGLTRQNDEIQQAATAVNQMTA 339

Query: 332 TITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQ 391
            + EVA +A  +S A+  A ++A      +  T    + +V     S   + EL    R+
Sbjct: 340 AVEEVARNAVSTSEASKSATDDAVDGRGQVDHTVKGITTMVHEITASTGAVSELAGHVRE 399

Query: 392 IESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGL 451
           I   + V+  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA R+Q +T EI+G+
Sbjct: 400 ISKVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQASTVEIEGM 459

Query: 452 IQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAAASEEQ 511
           I T+   A  A   +  S      +      A   L+ I L +  +   N  +A+ASEEQ
Sbjct: 460 ISTVQSGADGAVAAMGKSLSLATNTQELALRAGAALEKITLGVATINERNLVIASASEEQ 519

Query: 512 SVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMGRF 560
           +  A E+  N+ +I+D        A +T+ +S+EL++ A     L+  F
Sbjct: 520 AQVAREVDRNLINIQDLSTQSAAGANQTSASSQELSRLATSFNSLVANF 568



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 26/115 (22%)

Query: 465 MIDSSDRQIEESFSSITAAKKQ-------------LDSINLALL--ELTSANTQVAAASE 509
           MIDS++RQI+E  ++    K               L +I L +L   + +    VA AS 
Sbjct: 195 MIDSNNRQIKEGAAAAADLKASSVLMLEIGVVIAFLVAIMLGVLITRMITRPLAVAVASA 254

Query: 510 EQ-----------SVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGL 553
           ++           S + DE    +  + D    +  + Q+ A AS++LA  A+ L
Sbjct: 255 QRIAGGDLTQPIVSTSGDEAGQLLNALSDMQGGLKNTIQQIASASDQLASAAEEL 309