Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  243 bits (621), Expect = 1e-68
 Identities = 162/490 (33%), Positives = 263/490 (53%), Gaps = 17/490 (3%)

Query: 82  SQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPSIRSYLANLEQDLDSLGR 141
           S  ++Q +  + +    +++ +Q+   +R  +++    T      + +A +++ L  +G+
Sbjct: 161 SVSQEQDSSERMEEFTNISQLRQQVQTARYQVQTYTFTTRDADESAAIAAIDEALKEIGQ 220

Query: 142 ----EHEEFERKLNELLNELRSGRE----VKLLVADAEQIEQLQISLDQRLIDILRKIEQ 193
               +  E  + L      L+S RE     K +   AE  +++   L + L+D +  +  
Sbjct: 221 IAQDQGNESLQGLTPATAALQSYRERLGEFKQIQTKAEADQEIMEGLGETLLDSVGALNH 280

Query: 194 ATEQSVLVTEQEEREALWGMIYLSA---FAILFGLILGFAFSKQIVMAIARARKLANEMA 250
                 L T Q + EA      LS+    A+L GL+  +  ++QI + + +    A  +A
Sbjct: 281 ------LQTAQRDSEAANSSAMLSSVAGLALLIGLLAAWIMTRQITVPLQQTLSAAARIA 334

Query: 251 EGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKK 310
           +G+ S+   VT  DE+GQL  SM TM  SL  +VG + +  + IAS   QL++  +    
Sbjct: 335 QGDLSRDISVTRRDEMGQLQGSMQTMTVSLRELVGGISEGVSQIASAAEQLSAVTKQTCI 394

Query: 311 SVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQ 370
            V  Q+  T+QV +AM +MA T+ EVA +A+E+S A A+A + AR   +V+G+  T   Q
Sbjct: 395 GVTSQKDETDQVATAMNEMAATVQEVARNAQEASQAAAQADQQARSGDEVVGQAITQIEQ 454

Query: 371 LVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVV 430
           L      S Q +  L+  + +I   + V++ +S+QTNLLALNAAIEAARAGE GRGFAVV
Sbjct: 455 LAREVLNSTQSMSALKQESNKIVGVLDVIKSVSQQTNLLALNAAIEAARAGEAGRGFAVV 514

Query: 431 ADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSI 490
           ADEVR LA R+Q++T EI+ LI  L    Q     +DSS    + +      A   L+ I
Sbjct: 515 ADEVRGLAQRTQKSTEEIEELIAALQTGTQQVATTLDSSRTLTDNTVELSRRAGGALEQI 574

Query: 491 NLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQA 550
              +  +   N Q+A ASEEQSV A++I+ N+  +RD  E    ++++TA +S ELA+  
Sbjct: 575 TRTVATIQHMNEQIATASEEQSVVAEQINRNVISVRDISEQTAAASEQTAASSVELARLG 634

Query: 551 QGLKLLMGRF 560
             L+ L+G+F
Sbjct: 635 THLQTLVGKF 644