Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  190 bits (482), Expect = 1e-52
 Identities = 148/565 (26%), Positives = 270/565 (47%), Gaps = 32/565 (5%)

Query: 5   NNLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNL-PLA--KLMTDMTV 61
           N L I  KM+      + L ++V   S++ M ++   +  I +D + PL   KL+ D   
Sbjct: 2   NQLQIKHKMLLGFFIPVLLLIIVCGVSMSIMSKIEDGVLRIYNDRVVPLEDLKLIGDDYA 61

Query: 62  HQLEGAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQ-EFNQSRQLLESSIEHT 120
             +  AI       A G  + + +    + +  +    +K+   E     Q L S  +  
Sbjct: 62  VSVIDAINKAN---AGGFSAEEARNGLIEAKKNIASRWDKYMSTELTADEQKLASQTQQL 118

Query: 121 ISPSIRSYLANLEQDLDSLGREHEEFERKLNELLNELR--SGREVKLLVADAEQIEQLQI 178
            +P+ +     +++     G    +F   +  L   +   SG+  +L            +
Sbjct: 119 FAPANQQIQLLIDKLSGKSGSVTGQFSADIIPLYQVIDPISGKVAEL------------V 166

Query: 179 SLDQRLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMA 238
           +L   + D+ R+  +    S L          W  I L+ FA+L     G   ++ ++  
Sbjct: 167 TLQIHIADLEREQVETLHSSSLK---------W-FIGLAVFAVLITSFFGVWVNRGVMTP 216

Query: 239 IARARKLANEMAE-GNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIAST 297
           +   R+   ++ E  + +    V   DE+G +   +N +   L  I+  + + A+T+  +
Sbjct: 217 VTEIRQKLRQIREKSDMTVSFTVFRDDELGHIAKDLNGVVNHLKGILKNIAEAASTLGDS 276

Query: 298 VTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYS 357
             +L          + +QQ+ TEQ  +AM +M   + EVA S+  ++ +   A E+A   
Sbjct: 277 ADELNEFTRQANDRMFKQQSETEQTATAMNEMTAAVAEVAQSSNSAAESARNADESAARG 336

Query: 358 CDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEA 417
             ++ ++ +  S L +  Q +  +I EL   ++ I   + V++ I+EQTNLLALNAAIEA
Sbjct: 337 NSIVQQSISSMSVLASQIQGTAAVIGELATESQNIGRVLDVIKSIAEQTNLLALNAAIEA 396

Query: 418 ARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESF 477
           ARAGEQGRGFAVVADEVR LA R+ ++T EI+ +I++L +  +SA   ++    Q++ + 
Sbjct: 397 ARAGEQGRGFAVVADEVRTLAQRTSESTREIESMIESLQQGVKSAVNSMEQGIAQVDNAN 456

Query: 478 SSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQ 537
            S  AA   L  I  ++  +T  NT +A A++EQS  A+ I+ ++  I D  +    +A 
Sbjct: 457 ESTNAAGSALQDIVASVDSITQLNTHIATAADEQSCVAESINQSIIAISDIAQESTQAAN 516

Query: 538 ETAQASEELAQQAQGLKLLMGRFVI 562
           + ++A  +LAQ A  ++  +G F++
Sbjct: 517 DLSEAVHQLAQLAGHMRTQVGTFIL 541