Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  199 bits (506), Expect = 2e-55
 Identities = 158/576 (27%), Positives = 286/576 (49%), Gaps = 51/576 (8%)

Query: 5   NNLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPL--AKLMTDMTVH 62
           N L+I  K    +  ++ +T+ ++  SI   KR++ + + +A   L    A L  D  ++
Sbjct: 4   NELTIRTKFSIPLIIIVVMTVAIAVVSILNAKRLSSDAQELATTFLSAVDAGLNADRDLY 63

Query: 63  QLEGAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTIS 122
           Q   A+T  + +    +    G               +K++Q+F+++ Q     +   +S
Sbjct: 64  Q---ALTASQSYVQHRLLGQSGG--------------DKYRQDFDENAQQALDRMALVLS 106

Query: 123 PSIRSYLANLEQDLDSLGREHEEFERKLNELLN---ELRSGREVKLLVADAEQIEQLQIS 179
                    L +D   L     +F+R+ +  LN   ++ +  + +  VA A   +++ + 
Sbjct: 107 ---------LLKDYPELQSNKAQFQREYDAWLNAATQVFTMVDSQSPVAAASYNDEVVMP 157

Query: 180 LDQRLID--------ILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAF 231
           L + L          +  K ++ T ++ L+  Q     L+G+I L   A +  ++ G   
Sbjct: 158 LFKALRGHYDKTGEWVKNKADEVTSEA-LIASQRGINLLFGIIILVILASIVSVVYGPR- 215

Query: 232 SKQIVMAIARARKLANEMA-----EGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGE 286
                +  +R  +L   +A     EG+   R   +  DE+  L  + N +   L  ++G 
Sbjct: 216 -----LVTSRVEQLDTMIAAISDGEGDLRGRLDDSGRDELSLLARTFNGLMMKLQQLIGT 270

Query: 287 VIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAA 346
           +   A ++ + VT L  SA+ ++K   +Q AN EQ+ +A+ Q++  + EVASS++ + + 
Sbjct: 271 IKSDAVSLDARVTGLNHSAKESEKISTEQNANLEQIATAVHQLSHAVHEVASSSQNALSD 330

Query: 347 TARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQT 406
           T  A    + S  V+G++     QL      + ++I  L + ++QI + + V+ GI+EQT
Sbjct: 331 TEHANNLIKESNAVVGQSVERVQQLAGVVSHASEVIQNLASESKQIVTVLDVIRGIAEQT 390

Query: 407 NLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMI 466
           NLLALNAAIEAARAGEQGRGFAVVADEVR LASR+QQ+T +I+ ++  L      A   I
Sbjct: 391 NLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEDIQRMVAGLESGVSEAVSAI 450

Query: 467 DSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIR 526
           DS  RQ++    +  +  K L  ++ A+         +A A+E+QS   DE++ N++ + 
Sbjct: 451 DSGTRQVDSVVDASGSITKALAEVDEAVSRTKDLIYLIATATEQQSKVVDEVNQNISSLN 510

Query: 527 DAGETIMLSAQETAQASEELAQQAQGLKLLMGRFVI 562
              +  +   + T +A++E+AQ   GL   +GRF++
Sbjct: 511 LLSQESIGVVRRTREAADEIAQIGTGLSGNVGRFLV 546