Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  184 bits (468), Expect = 8e-51
 Identities = 113/368 (30%), Positives = 208/368 (56%), Gaps = 10/368 (2%)

Query: 202 TEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIARARKLANEMAEGN--FSKRAK 259
           TE   ++ ++  I +++  I+  L        +I+  +   +   + ++ G+   + R  
Sbjct: 325 TEAIFKQKIYRSIAIASLLIIIALAFCVFLLNKIIADMVMLKNRIDTLSTGDADLTSRLA 384

Query: 260 VTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANT 319
           +T+ DE+  +  S+N+    L  ++ E+   +  I   + QL S +E+N++++ +  + T
Sbjct: 385 ITSKDELAAIGHSVNSFIGYLQAMMLEISHASQKITQGIGQLDSHSENNRQALSKHSSET 444

Query: 320 EQVTSAMAQMAITITEVASSAEESSAATARAQENARYSC----DVLGKTETVSSQLVANA 375
           E V +A++QM  +   VA SA + +A+T +A E A+ S     D  G  + +++++    
Sbjct: 445 ELVVTAISQMNASADAVAQSAGKMAASTHQANEEAKTSTLTVSDAAGSVQALANEM---- 500

Query: 376 QQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 435
             + Q I  +  +T QI S + V++ I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR
Sbjct: 501 NSASQSIHTMSENTNQIISVLGVIKEIADQTNLLALNAAIEAARAGEQGRGFAVVADEVR 560

Query: 436 ALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALL 495
           +LASR+Q  T +I+ ++ TL   A +A +++  +    ++   +       L ++  ++ 
Sbjct: 561 SLASRTQSCTTQIEQILTTLRRDADTAEQLMLETQNSCQQVTQNTARVTSNLGAVTDSIA 620

Query: 496 ELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKL 555
           EL     Q+A+ASE+QSV   EIS NM  I    +T++ + Q+T ++++ L+   Q L  
Sbjct: 621 ELNDLGGQIASASEQQSVVTAEISQNMHTIEAMAQTLLQNGQQTLESTQSLSAANQQLSA 680

Query: 556 LMGRFVIS 563
           ++ +F ++
Sbjct: 681 MVRKFKLA 688