Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  184 bits (467), Expect = 9e-51
 Identities = 117/369 (31%), Positives = 192/369 (52%), Gaps = 7/369 (1%)

Query: 196 EQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIARARKLANEMA--EGN 253
           E   L+ E   +  +W ++  +AF  L   +     S  +   IA+   +  ++   EG+
Sbjct: 275 EVFALLEESAYQILVWTVLIAAAFIGLSTFV-----SASVSQPIAKVADMLQDIGQGEGD 329

Query: 254 FSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQ 313
             +R  V   DE+ QL    N+  + + H + EV D +  ++     +A+ A+  +   Q
Sbjct: 330 LRQRLPVEGNDELAQLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQ 389

Query: 314 QQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVA 373
            Q+  T  V +A+ +M  T+ E+A +A +++     A   +     V+ +     +QL  
Sbjct: 390 LQKDQTMMVVTAINEMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQ 449

Query: 374 NAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADE 433
           + +Q   +I  L   T  I S + V+  +S+QTNLLALNAAIEAARAGE GRGFAVVA+E
Sbjct: 450 DVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEE 509

Query: 434 VRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLA 493
           VR LASR+  +T E++ +I  L   A  A + +  S  + +E   ++  A   L  I+  
Sbjct: 510 VRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQ 569

Query: 494 LLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGL 553
           +  +T  N QVAAA+EEQS   ++I+ N+T+I +  +    ++Q  AQAS+ L Q A  L
Sbjct: 570 IGAITDMNIQVAAATEEQSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRL 629

Query: 554 KLLMGRFVI 562
             L+  F +
Sbjct: 630 DTLVAGFKV 638



 Score = 25.4 bits (54), Expect = 0.007
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 22/201 (10%)

Query: 97  ELVNKFKQEFNQSRQLLESSIEHTIS-PSIRSYLANLEQDLDSLGREHEEFERKLNELLN 155
           + +N+  Q+  Q   ++ES   HT S  SI   +  +    + L          LN  + 
Sbjct: 442 DTINQLSQDVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLA---------LNAAIE 492

Query: 156 ELRSGREVKLLVADAEQIEQL----QISLD--QRLIDILRKIEQATEQSVLVTEQEEREA 209
             R+G   +     AE++  L      S D  Q++ID L+       +++  ++   +E 
Sbjct: 493 AARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSKSRSQEG 552

Query: 210 LWGMIYLSAFAILFGLILGFAFSKQI-VMAIARARKLANEMAEGNFSKRAKVT-----TG 263
           +  +   S         +G      I V A    +    E    N ++ +++T     T 
Sbjct: 553 VQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTVVEDINRNVTEISEITQRTSETS 612

Query: 264 DEIGQLITSMNTMAQSLSHIV 284
             + Q   S+N +A  L  +V
Sbjct: 613 QAVAQASQSLNQLAHRLDTLV 633