Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  200 bits (508), Expect = 1e-55
 Identities = 146/562 (25%), Positives = 269/562 (47%), Gaps = 20/562 (3%)

Query: 4   FNNLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPLAKLMTDMTVHQ 63
           F N+++ Q++I++   L  L L V+ +S+ ++  +      I  + +P  +    M +  
Sbjct: 2   FKNMTLAQRLISVFFILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPSIRSSAQMHIAL 61

Query: 64  LEGAIT-LERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTIS 122
           L+     L  V      +S+                +   KQ F  ++   E+  +    
Sbjct: 62  LDARRNELNMVIDVMTHDSAA---------------IEISKQRFETAKSEFEAGAQQYAK 106

Query: 123 PSIRSYLANLEQDLDSLGREHEEFERKLNELLNELRSGREVKLLVADAEQIEQLQISLDQ 182
            +  S     EQ    LG   E++    + L++ +  G      +       Q      +
Sbjct: 107 LNFVS--EQDEQLFIKLGEAAEKYFSAHSSLVSAIDQGDMASANIMIKTLTRQTLEVAGE 164

Query: 183 RLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIARA 242
             +++  + ++A ++ VL +E   + A    I +    I F +++ F   +QI   I   
Sbjct: 165 ETMNLRHENDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWL 224

Query: 243 RKLANEMAEGNFSKRAKVTT--GDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQ 300
            K  +E++ GN + +  +     DE GQL  S N M  +L  +V EV +    ++S   +
Sbjct: 225 LKQTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEE 284

Query: 301 LASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDV 360
           ++S A  +  +++ QQ    Q+ +AM +M  T+ +VA +  +++ A  +A + A    + 
Sbjct: 285 ISSVALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSET 344

Query: 361 LGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARA 420
           +  +     ++    + +  +I +L   +R I   + V++GI+EQTNLLALNAAIEAARA
Sbjct: 345 VNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARA 404

Query: 421 GEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSI 480
           GEQGRGFAVVADEVR LA R+Q +T  I  +I  L  RA  A + +  S   + E+    
Sbjct: 405 GEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKA 464

Query: 481 TAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETA 540
             A + +  I+ ++  ++  N Q+A A+EEQ   ++E++ N+ +I  A E +   A++ A
Sbjct: 465 REAGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMA 524

Query: 541 QASEELAQQAQGLKLLMGRFVI 562
            A  +L+  A  L+ ++ +F I
Sbjct: 525 MACNDLSHLATQLQDMVKKFHI 546