Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  207 bits (528), Expect = 7e-58
 Identities = 152/495 (30%), Positives = 259/495 (52%), Gaps = 27/495 (5%)

Query: 79  IESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPSIRSYLANLEQ---D 135
           IES   +  Q   Q  +++L  + +++F   R++   S   T   +I  +  +L     D
Sbjct: 142 IESMLKEYDQLSLQVAMLQL-RRNEKDFMLRREM---SYVETFDSNIAVFNTSLRSSSLD 197

Query: 136 LDSLGREHEEFERKLNELLNELRSGREVKLLVADAEQI--EQLQISLDQRLIDILRKIEQ 193
            D+        + K+  L+++ +  ++ K LV+  +Q+  ++ Q ++ Q L+   R  E 
Sbjct: 198 FDT--------QNKIAALIDQYQ--KDFKSLVSKEQQLGLDEKQGTMAQ-LVAANRLTES 246

Query: 194 ATEQS-----VLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIARARKLANE 248
           + ++        + E E      G+      A++ G+I  +   + I+  + R  ++ + 
Sbjct: 247 SADELHNLALKAIDETENSSRNIGITVFLIIALILGIIT-YLIIRSIITPVERITQVISR 305

Query: 249 M-AEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAES 307
           +    + + R   +T DE+G++    N+M  S   ++ +VI+   TI ++   ++ +A  
Sbjct: 306 IEVSKDLTLRCDASTQDELGEIAQHFNSMVGSFQQLIEQVIESVATINTSSKSVSQNAML 365

Query: 308 NKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVLGKTETV 367
             + V QQ   T+ V +A+ +M  TI E+A + E ++    +  +NA+     + +T   
Sbjct: 366 ASEGVAQQLNETDMVATAITEMGATIDEIAKTTELAALKAGKTHDNAQLGQSEVEQTILK 425

Query: 368 SSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGF 427
             QL      S  ++ ELE  +  I S + V+ GI+EQTNLLALNAAIEAARAGEQGRGF
Sbjct: 426 IRQLSEQINTSASVVDELERDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGF 485

Query: 428 AVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQL 487
           AVVADEVR+LA R+Q +T EI  +IQTL  R ++  +++D+S +Q  ES     AA + L
Sbjct: 486 AVVADEVRSLAMRTQSSTQEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAAAGELL 545

Query: 488 DSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELA 547
             IN  +  +   +TQ+AAA EEQS+ A E++ N+  IRD  E    +A   A AS+EL 
Sbjct: 546 KLINNDVRNIMDMSTQIAAAIEEQSMVAAEVNKNVVVIRDIAEDSSRAADANASASDELR 605

Query: 548 QQAQGLKLLMGRFVI 562
            +A+ L   +  F I
Sbjct: 606 TRAEYLVSAVSHFKI 620