Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  194 bits (493), Expect = 9e-54
 Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 12/385 (3%)

Query: 179 SLDQRLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMA 238
           S D  LI ++ K E  ++ + L        A W         ++FGL+L   F  Q    
Sbjct: 253 STDWALIFVMNKQEIMSQATSL--------AWWMSAVGVGLLVIFGLVLVAIFKMQF-KD 303

Query: 239 IARARKLANEMAEGNFSKRAKVTTG---DEIGQLITSMNTMAQSLSHIVGEVIDRANTIA 295
           + R     N++AEG+     ++ T    DEIG L +  N   + L  ++  + + A  + 
Sbjct: 304 LERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLE 363

Query: 296 STVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENAR 355
                 ++SA  N + ++ QQ     V +A+ +MA    E+AS+AE ++     A   + 
Sbjct: 364 YQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSN 423

Query: 356 YSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAI 415
           +    + +++     L      + ++I EL   +++I S +L + GI+EQTNLLALNAAI
Sbjct: 424 HGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAI 483

Query: 416 EAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEE 475
           EAARAGEQGRGFAVVADEVR L+ R+  +T EI+ +I+TL + A  A K +  S    E 
Sbjct: 484 EAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAET 543

Query: 476 SFSSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLS 535
           S +   +A + L  I+ A+ E++   +Q+A A+EEQ+    EI+ N   IR+  E + + 
Sbjct: 544 SVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIE 603

Query: 536 AQETAQASEELAQQAQGLKLLMGRF 560
           AQ     S+ELA  A  L+  + RF
Sbjct: 604 AQSAMVQSQELAHLAASLQQEVSRF 628