Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  183 bits (465), Expect = 1e-50
 Identities = 118/364 (32%), Positives = 191/364 (52%), Gaps = 3/364 (0%)

Query: 201 VTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIARARKLANEMA--EGNFSKRA 258
           VTEQ   ++L  ++           ++  A  + +V     A  L N++A  EG+ +KR 
Sbjct: 192 VTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNL-NDIAKGEGDLTKRL 250

Query: 259 KVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQAN 318
            V   DEI QL  + N     L HI+G+V      + +    +    +     +      
Sbjct: 251 SVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNE 310

Query: 319 TEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQS 378
           T+QV +A+ +M+ T +EVA +  + + AT  A  +   +   +  +    + L+     +
Sbjct: 311 TDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQINHA 370

Query: 379 QQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 438
              I  L   +++I S + V+ GI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA
Sbjct: 371 AGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 430

Query: 439 SRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELT 498
           SR+Q +T EI  ++  L +    A K +D S +    S  S  A  + L S+  A+  + 
Sbjct: 431 SRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSVTSAVTAIN 490

Query: 499 SANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMG 558
             +TQ+A A+ EQS   +EI+ N+  I++    ++ S++  A+ S+ ++Q+   L  L+G
Sbjct: 491 DMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQEGTNLGNLVG 550

Query: 559 RFVI 562
           +F I
Sbjct: 551 QFKI 554