Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  195 bits (496), Expect = 3e-54
 Identities = 134/482 (27%), Positives = 245/482 (50%), Gaps = 25/482 (5%)

Query: 79  IESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPSIRSYLANLEQDLDS 138
           + +S     Q +   QL+E + +F  +F       ++    T+ P I  Y+   +Q+L  
Sbjct: 69  VHNSDAISLQQRNVRQLVEQLAEFNTDFMGQ----DARTIRTLLPQIEQYVRLYQQELAF 124

Query: 139 LGREHEEFERKLNELLNELRSGREVKLLVADAEQIEQLQISLDQRLIDILRKIEQATEQS 198
             +   E E      L   R     K+    + +I QL   + QR      ++ +  E  
Sbjct: 125 AKQTGTEPE------LTSERGALGPKV----SNEINQLVKLITQRN----HELGKQAEDK 170

Query: 199 VLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIARARKLANEMAEGNFSKRA 258
           V  TE      L G+I +   AI+  L+     S+++V  + + +++   +A+G+ +++ 
Sbjct: 171 VNATEA----LLLGLILV---AIVASLLSALFMSRRLVNIVHQIKRVVEHLADGDLTQKT 223

Query: 259 KVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQAN 318
           +++  +E+  L   ++ +   L H++ ++   +  ++  + QL   + +N  ++Q     
Sbjct: 224 QISGQNELCALGADLDRVIDHLRHMISDIAQASEHMSDQIGQLNVQSNANTHALQTHAVE 283

Query: 319 TEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQS 378
           T+QV +AM +M+ T   VA  A  ++  T +A E A  S   + +       LV     +
Sbjct: 284 TDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTA 343

Query: 379 QQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 438
              I E+  +TR I + + V+  I++QTNLLALNAAIEAARAGEQGRGFAVVADEVRALA
Sbjct: 344 AHTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALA 403

Query: 439 SRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELT 498
           +R+Q +T EI  +++ L   A SA   +D + +  +++  + T   + L+++   + ++ 
Sbjct: 404 ARTQASTAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDIN 463

Query: 499 SANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMG 558
             + Q+A A+EEQS  ++EI+ N+  IR+  E +  S + T  ++  LA   + L  ++ 
Sbjct: 464 GLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSATSLAATKEQLTGVVS 523

Query: 559 RF 560
            F
Sbjct: 524 HF 525



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 56/296 (18%), Positives = 103/296 (34%), Gaps = 47/296 (15%)

Query: 39  AVEIEAIAHDNLPLAKLMTDMTVHQLEG-AITLERVFRAAGIESSQGKQQQNQYQAQLME 97
           A++  A+  D +  A      T H + G A +  R  + A  ++ + K+   Q    ++ 
Sbjct: 276 ALQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVA 335

Query: 98  LVNKFKQEFNQSRQLLESSIEHTISPSIRSYLANLEQDLDSLGREHEEFER-KLNELLNE 156
           LV K              +  HTI+  +     ++   LD +G   ++     LN  +  
Sbjct: 336 LVGKV------------DTAAHTIA-EMNENTRHIATILDVIGDIADQTNLLALNAAIEA 382

Query: 157 LRSGREVKLLVADAEQIEQLQISLDQRLIDILRKIEQA-TEQSVLVTEQEEREALWGMIY 215
            R+G + +     A+++  L         +I + +E+  T  +  V   +E         
Sbjct: 383 ARAGEQGRGFAVVADEVRALAARTQASTAEINQMLERLRTGANSAVNAMDE--------- 433

Query: 216 LSAFAILFGLILGFAFSKQIVMAIARARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNT 275
                           +KQ     A    L  E  E         T   +I  L   + T
Sbjct: 434 ----------------TKQSCQDAADTTTLVTESLE------TLTTYVFDINGLSNQIAT 471

Query: 276 MAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAI 331
            A+  S +  E+    NTI   V +L  S ++   S     A  EQ+T  ++   +
Sbjct: 472 AAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSATSLAATKEQLTGVVSHFRL 527