Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  202 bits (513), Expect = 4e-56
 Identities = 132/471 (28%), Positives = 248/471 (52%), Gaps = 24/471 (5%)

Query: 95  LMELVNKFKQEFNQSRQLLESSIEHTISPSIRSYLANLEQDLDSLGREHEEFERKLNELL 154
           L E  NK +     ++ ++++    +++   +  LA LE   DS+              +
Sbjct: 220 LSETKNKLEYVNRHAQDIIDADTLKSVNEDTKKVLALLEGP-DSMVLLKATQLNHAKSAM 278

Query: 155 NELRS-GREVKLLVADAEQ----IEQLQISLDQRLIDILRKIEQATEQSVLVTEQEEREA 209
           N+L +  ++VK++  + E     IE +  ++ Q  I    KI+ A+ ++++V        
Sbjct: 279 NQLATIEKDVKVIDRNMEDVSNNIESVAANMSQETI---AKIDAASIRTIIVV------- 328

Query: 210 LWGMIYLSAFAILFGLILGFAFSKQIVMAIARARKLANEMAEGNFSKRAKVTTGDEIGQL 269
                     AI+  +I+ FA    +  ++ +     N +A GN + +   +  DE  +L
Sbjct: 329 --------LIAIVAAVIISFAVVAPLKRSLYQVNNALNVLASGNLTHKLDDSGHDEFAEL 380

Query: 270 ITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQM 329
             + N +  SL  ++  ++DR+N +A+   Q ++        +Q+Q++  +QV +A  ++
Sbjct: 381 AKNCNRLVDSLRGLIVGILDRSNQLAAAAEQTSAITAQTTSGIQEQKSQVDQVATATTEL 440

Query: 330 AITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEAST 389
           + +  +V+ SA+++ A   +A + A++   +  + +     L     ++ Q+I ++++ +
Sbjct: 441 SSSAQQVSMSADDALAQIKQADQEAKHMRTIAEENKRTILALADEVAKAGQVINKVQSDS 500

Query: 390 RQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIK 449
             I S + V+ GI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LASR+Q +T EI+
Sbjct: 501 ASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQVSTREIQ 560

Query: 450 GLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAAASE 509
            +I+ L + AQ A   +D    Q          A   L++I+ ++ +   A T +A A++
Sbjct: 561 QMIEVLQQGAQQAVAAMDMGRAQANACVDKTEQANLALETISQSVHKAYDAGTHIAHAAQ 620

Query: 510 EQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMGRF 560
           EQ+V + ++S  +  I    E   + A +TAQ+S ++A+ A+ L+  +G F
Sbjct: 621 EQNVVSQQVSEKLEHIAAISEETAIGADQTAQSSHQVAKLAEELQASVGEF 671