Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  437 bits (1125), Expect = e-127
 Identities = 245/561 (43%), Positives = 371/561 (66%)

Query: 2   KWFNNLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPLAKLMTDMTV 61
           ++  +LSI  KM ALVG +L L L++S +S+ KMKRV+ E+  IA +N+PL +L TD+T+
Sbjct: 3   RFLKDLSIKHKMFALVGMMLVLMLLLSGFSLLKMKRVSDEVHGIATENIPLVRLSTDVTI 62

Query: 62  HQLEGAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTI 121
            QLE +I LE+ FRA+ I+ S  ++  + + A +++       E   ++ +L  +++ + 
Sbjct: 63  QQLESSIILEKAFRASDIKVSPEQRLIDGFIADVIKHKELINHELQSTQTMLNDALKLSQ 122

Query: 122 SPSIRSYLANLEQDLDSLGREHEEFERKLNELLNELRSGREVKLLVADAEQIEQLQISLD 181
              +R     L Q++ ++ +    ++ +L  ++  +   +E  LL    + +E+ Q   +
Sbjct: 123 PAELRDKTLQLSQEIANIIQGFRHYDAQLVAVIAGIEQKQESALLAQRVDALEKTQKEFN 182

Query: 182 QRLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIAR 241
             L     ++EQ T+ +V VTE+EE +A +GM+ +S+ A++ GL +G   S+ IV +I +
Sbjct: 183 TELSQFALQLEQMTKTAVSVTEEEEIKAAYGMMIISSIAVVIGLFVGLLSSRYIVQSITQ 242

Query: 242 ARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQL 301
            R  A+ M  GNFS    VT+ DE+G+L  SMN MA +LS  VG+V+DR+  IAS VT+L
Sbjct: 243 LRNAASLMQSGNFSHELAVTSKDELGELTISMNQMALTLSKTVGQVVDRSEEIASMVTEL 302

Query: 302 ASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVL 361
            + AE+N++++ +QQ NT+QV ++M QMA TITEVA SAE +S +  +A+  A+ SC V+
Sbjct: 303 NAVAENNREAILKQQDNTDQVAASMTQMAATITEVACSAETASFSAGQAENRAKESCGVV 362

Query: 362 GKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAG 421
             +E ++ QLV +AQ S Q+I +L+AST +I +FV VV+ I+ QTNLLALNA+IEAARAG
Sbjct: 363 EASEKITQQLVVSAQHSSQLIQQLQASTGKILNFVSVVDAIAGQTNLLALNASIEAARAG 422

Query: 422 EQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSIT 481
           +QGRGFAVVADEVRALA+RSQ AT EI  LIQTLV  A+SA    + ++RQI ES   + 
Sbjct: 423 DQGRGFAVVADEVRALATRSQTATQEISELIQTLVVDAKSAVSSFEENERQISESSVLVN 482

Query: 482 AAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQ 541
             K+ L  I  AL +L+ AN+QVA ASEEQ+V A++IS  +  IRD+GE ++ SA ETA+
Sbjct: 483 QIKQNLFEILDALTQLSQANSQVATASEEQAVTAEDISERINAIRDSGELVLNSAFETAK 542

Query: 542 ASEELAQQAQGLKLLMGRFVI 562
           ASE L+QQA  L+  M +F +
Sbjct: 543 ASESLSQQANSLREGMQQFKV 563