Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 687 a.a., type IV pilus biogenesis protein PilJ from Pseudomonas fluorescens FW300-N2E2
Score = 113 bits (282), Expect = 3e-29
Identities = 95/315 (30%), Positives = 160/315 (50%), Gaps = 38/315 (12%)
Query: 54 ATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQ 113
AT L AG + ++A+ + +++ +A +E + ++ T++++M I++ + A +
Sbjct: 398 ATINLTAG--QVAAAVQETQATAMHLAQASEHQAQQISEASTSINEMAQSIDQVSANAAE 455
Query: 114 SKQILTKLEQDIVDVANKINEMVSN----VQTSSERQNDSVKRMIELSEQAAKINDAVKQ 169
S + + V++ANK NE+V N + E+ D+ KR+ L E + +I D V
Sbjct: 456 SSAVAERS----VEIANKGNEVVHNTIHGMDNIREQIQDTAKRIKRLGESSQEIGDIVSL 511
Query: 170 VIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNG 229
+ IADQTN+LALNAAI+A AG G+GFAVVAD V+ LAE++ IE+L++ I
Sbjct: 512 IDDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATRQIETLVRAI--- 568
Query: 230 AEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIA 289
+ +N S ++ +EV +G L +D+ V L+ + +S
Sbjct: 569 -QADTNEAVISMEQTTTEVVRG--------------ARLAQDAGVALEEIEGVSKTLAAL 613
Query: 290 LKGSESVSQAAQEQ-SAACEESLKSLDQQQI---ALDGAVTAAQS---LDELTDELRTST 342
+ +S+S AAQ+Q ++A + SL QQI G+ A+S L ++ +LR S
Sbjct: 614 I---QSISNAAQQQTTSAGQISLTMNVIQQITSQTSSGSTATAESIGNLAKMASQLRRSV 670
Query: 343 DIVKSSEEVAAAAEE 357
AA EE
Sbjct: 671 SGFTLPAAAAAGDEE 685
Score = 93.6 bits (231), Expect = 3e-23
Identities = 120/624 (19%), Positives = 248/624 (39%), Gaps = 97/624 (15%)
Query: 29 KEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSS 88
K D + +T+ Q A +A +L E+ + Q + Q+A+ +S
Sbjct: 128 KNTDAILSSEQTVLSLHQVAATLAETVPQLQVEYEKVVEILLQRGAPAAQVAMAQRQSLL 187
Query: 89 ATKQSETAVSQMNNFI--NEQATYATQSKQILTKLEQDIVDVANKINEMVSN---VQTSS 143
A E + +N + +E A+ A + +D +N M+ ++ S
Sbjct: 188 A----ERILGAVNTVLAGDENASQAADT------FGRDAARFGQVLNGMLQGDPALKISQ 237
Query: 144 ERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVAD 203
+ D+ R+ E+SE ++ +V +++ + +
Sbjct: 238 VQDRDARARLSEISELFEFVSGSVDEILETSPELF------------------------- 272
Query: 204 TVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRN 263
K ++A NI +L + + + A ++ ++ + G+V+ L L+
Sbjct: 273 -------KVRESAGNIFNLSQTLLDEASHLATAFENLAGGRSINTIGGYVLGL-LALMSI 324
Query: 264 EMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDG 323
++ LV E + + + AQ+ ++ LD+ + DG
Sbjct: 325 ILIGLVMVRET------------------NRQLHETAQKNERNQNAIMRLLDEIEDLADG 366
Query: 324 AVTAAQSLDE-----LTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQ 378
+T S+ E + D + S D ++ A L+AG ++ + E
Sbjct: 367 DLTVTASVTEDFTGTIADSINYSVDQLRD----LVATINLTAG--QVAAAVQETQATAMH 420
Query: 379 ISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILA 438
++ ++H A+ + TS+ ++ Q A S E+ + + V I
Sbjct: 421 LAQASEHQAQQISEASTSINEMAQSIDQVSANAAESSAVAERSVEIANKGNEVVHNTIHG 480
Query: 439 ITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGF 498
+ + + + + S++I IV I +++ QT +LA+N A++A+ AG+ G+GF
Sbjct: 481 MDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILALNAAIQASMAGDAGRGF 540
Query: 499 AVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEE---AQKAALTI 555
AVV+ ++Q LA ++ QI+ V+ IQ N + + V+ AQ A + +
Sbjct: 541 AVVADEVQRLAERSSAATRQIETLVRAIQADTNEAVISMEQTTTEVVRGARLAQDAGVAL 600
Query: 556 KQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAAR 615
++++ V S++ + +SI++A QQ T+A + S
Sbjct: 601 EEIEGV--------------SKTLAALIQSISNA---AQQQTTSAGQISLTMNVIQQITS 643
Query: 616 QQSSSTSELASAIENIAAVADELQ 639
Q SS ++ A +I N+A +A +L+
Sbjct: 644 QTSSGSTATAESIGNLAKMASQLR 667
Score = 48.1 bits (113), Expect = 1e-09
Identities = 67/359 (18%), Positives = 143/359 (39%), Gaps = 30/359 (8%)
Query: 128 VANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIH------IADQTN--- 178
+ + N + +ER +++ R+++ E A + V + IAD N
Sbjct: 331 MVRETNRQLHETAQKNERNQNAIMRLLDEIEDLADGDLTVTASVTEDFTGTIADSINYSV 390
Query: 179 --LLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESL---IKDISNGAEMV 233
L L A I AG+ T LA+ +E A I I +++ + V
Sbjct: 391 DQLRDLVATINL-TAGQVAAAVQETQATAMHLAQASEHQAQQISEASTSINEMAQSIDQV 449
Query: 234 SNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGS 293
S SS AE V+ + NK ++ N + + E + A K
Sbjct: 450 SANAAESSAVAERSVE---IANKGNEVVHNTIHGMDNIREQIQDTA-----------KRI 495
Query: 294 ESVSQAAQEQSAACEESLKSLDQQQI-ALDGAVTAAQSLDELTDELRTSTDIVKSSEEVA 352
+ + +++QE DQ I AL+ A+ A+ + D + ++ + +E +
Sbjct: 496 KRLGESSQEIGDIVSLIDDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSS 555
Query: 353 AAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAE 412
AA ++ + I +NE + ++ Q ++ A+ + +L +IE ++ +
Sbjct: 556 AATRQIETLVRAIQADTNEAVISMEQTTTEVVRGARLAQDAGVALEEIEGVSKTLAALIQ 615
Query: 413 SSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGIS 471
S A ++ T + T++ + ++++ +T + N+ +++ Q+ + V G +
Sbjct: 616 SISNAAQQQTTSAGQISLTMNVIQQITSQTSSGSTATAESIGNLAKMASQLRRSVSGFT 674
Score = 40.0 bits (92), Expect = 3e-07
Identities = 89/397 (22%), Positives = 154/397 (38%), Gaps = 68/397 (17%)
Query: 279 ADEMSSAAVIALKGSESVSQAAQ---EQSAACEESLKSLDQQQIALDGAVTAAQSLDELT 335
A+ + A L G E+ SQAA +A + L + Q D A+ +Q D
Sbjct: 188 AERILGAVNTVLAGDENASQAADTFGRDAARFGQVLNGMLQG----DPALKISQVQDR-- 241
Query: 336 DELRTSTDIVKSSEEVAAAAEEL---SAGIEEINRSSNEIMGALNQISSGAQHMAKSVET 392
D ++I + E V+ + +E+ S + ++ S+ I + A H+A + E
Sbjct: 242 DARARLSEISELFEFVSGSVDEILETSPELFKVRESAGNIFNLSQTLLDEASHLATAFEN 301
Query: 393 --GITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENL 450
G S+ I G LG L +L G+ + T ++ + A +N
Sbjct: 302 LAGGRSINTIG-GYVLGL------LALMSIILIGLVMVRETNRQL-------HETAQKNE 347
Query: 451 NEMANIERISRQIDKIVDGISNVSIQ-------TAMLAVNGAVEAAR---------AGEY 494
I R+ +I+ + DG V+ T ++N +V+ R AG+
Sbjct: 348 RNQNAIMRLLDEIEDLADGDLTVTASVTEDFTGTIADSINYSVDQLRDLVATINLTAGQV 407
Query: 495 GKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADIL--STVMEEAQKAA 552
+LA + A+QI + +I E + + A+ S V E + + A
Sbjct: 408 AAAVQETQATAMHLAQASEHQAQQISEASTSINEMAQSIDQVSANAAESSAVAERSVEIA 467
Query: 553 L--------TIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESS 604
TI +DN+R ++ D KR+ ES+ + I D I + ++ +
Sbjct: 468 NKGNEVVHNTIHGMDNIREQIQDTAKRIKRLGESS----QEIGD-------IVSLIDDIA 516
Query: 605 HATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
T A A Q+S + A A VADE+Q +
Sbjct: 517 DQTNILALNAAIQASMAGD---AGRGFAVVADEVQRL 550