Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (278), Expect = 7e-29
 Identities = 83/318 (26%), Positives = 151/318 (47%), Gaps = 15/318 (4%)

Query: 1   MALKKHITTSASSSFSPSNHSTSANAPKKEADDLR----RQARTLARKQ----QAAERVA 52
           + L + I    + +   +    S N  +  ADD +    R  + LA  Q    Q  E++A
Sbjct: 208 LLLTRSIVAPLNRALEAARTIASGNLVQVIADDGKDEPGRLLQALATMQVSLRQTIEQIA 267

Query: 53  SATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYAT 112
            +  +L A  +E S A+TQ  S       G ++  +  +Q+ TAV++M   + E A  A 
Sbjct: 268 GSATQLGAAAQELS-AVTQESSR------GLQQQHNEIEQAATAVNEMTAAVEEVARNAV 320

Query: 113 QSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIH 172
            + +   +  Q   +   ++ E V  +QT +     +   +  L+ Q   I   +  +  
Sbjct: 321 STSEASNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEGLAVQGRDIGKVLDVIRA 380

Query: 173 IADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEM 232
           IA+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA +  ++   IE ++  I NG   
Sbjct: 381 IAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMVAGIQNGTGQ 440

Query: 233 VSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKG 292
               ++ S+Q+ +S ++        L  I   +  + + + V+  A++E +  +    + 
Sbjct: 441 AVQSMQQSNQRTQSTLEMARAAGVALEQITQSIHQINERNLVIASASEEQAQVSREVDRN 500

Query: 293 SESVSQAAQEQSAACEES 310
             ++   A + ++  +++
Sbjct: 501 LVNIRDLATQSASGAKQT 518



 Score =  100 bits (248), Expect = 2e-25
 Identities = 79/295 (26%), Positives = 146/295 (49%), Gaps = 24/295 (8%)

Query: 329 QSLDELTDELR-TSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMA 387
           Q+L  +   LR T   I  S+ ++ AAA+ELSA  +E +R              G Q   
Sbjct: 250 QALATMQVSLRQTIEQIAGSATQLGAAAQELSAVTQESSR--------------GLQQQH 295

Query: 388 KSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAAT 447
             +E   T++ ++          A S+ +A  +     +E +T V E + AI   T    
Sbjct: 296 NEIEQAATAVNEMTAAVEEVARNAVSTSEASNQSTQAAQEGRTRVVETVDAIQTMTHDVQ 355

Query: 448 ENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQN 507
              + +  +    R I K++D I  ++ QT +LA+N A+EAARAGE G+GFAVV+ +++ 
Sbjct: 356 ATASMIEGLAVQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRA 415

Query: 508 LANDAAENAEQIKDQVKNIQ----EQINIVRKDLADILSTVMEEAQKAALTIKQ----LD 559
           LA+  A++ ++I+  V  IQ    + +  +++      ST +E A+ A + ++Q    + 
Sbjct: 416 LAHRTAQSTQEIEKMVAGIQNGTGQAVQSMQQSNQRTQST-LEMARAAGVALEQITQSIH 474

Query: 560 NVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAA 614
            +  R   +   S+  ++ +  ++R++ + R    Q A+ A+++S AT E +  A
Sbjct: 475 QINERNLVIASASEEQAQVSREVDRNLVNIRDLATQSASGAKQTSDATHELSRLA 529



 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 95/450 (21%), Positives = 174/450 (38%), Gaps = 50/450 (11%)

Query: 207 TLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMV 266
           +L E   +    +E L K  S+ A +      S+ Q+AE        + K L   + EM+
Sbjct: 80  SLTEAESRIGVLVEKLNKANSSYAAL-----PSTPQEAELYKVFSATLEKYLQA-QKEML 133

Query: 267 DLVKDSEVLLKAADEMSSAAVIALK------GSESVSQAAQEQSAACEESLKSLDQQQIA 320
           DL + ++     ADE+ +     +K      G +     A   + A E S K+ +    A
Sbjct: 134 DLSRQNK-----ADELRTHINTRIKEGTDLMGEQLNKLIAINVAGASESSAKAGEHYDSA 188

Query: 321 LDGA--VTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAG--IEEINRSSNEIMGAL 376
           + G   V+ + +L  +   L  +  IV        AA  +++G  ++ I     +  G L
Sbjct: 189 ITGIIIVSISAALATVVLALLLTRSIVAPLNRALEAARTIASGNLVQVIADDGKDEPGRL 248

Query: 377 NQISSGAQ-HMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEM 435
            Q  +  Q  + +++E    S TQ+   A+      + S +  ++    IE+  T V+EM
Sbjct: 249 LQALATMQVSLRQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEM 308

Query: 436 ILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYG 495
             A+ E  +      N ++  E  ++      +G + V ++T         +        
Sbjct: 309 TAAVEEVAR------NAVSTSEASNQSTQAAQEGRTRV-VETVDAIQTMTHDVQATASMI 361

Query: 496 KGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTI 555
           +G AV   DI            ++ D ++ I EQ N++  + A   +   E  +  A+  
Sbjct: 362 EGLAVQGRDIG-----------KVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVA 410

Query: 556 KQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAAR 615
              D VR+        ++ I +   GI+     A   MQQ     + +      A  A  
Sbjct: 411 ---DEVRALAHRTAQSTQEIEKMVAGIQNGTGQAVQSMQQSNQRTQSTLEMARAAGVALE 467

Query: 616 QQSSSTSE-------LASAIENIAAVADEL 638
           Q + S  +       +ASA E  A V+ E+
Sbjct: 468 QITQSIHQINERNLVIASASEEQAQVSREV 497



 Score = 25.0 bits (53), Expect = 0.009
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 8   TTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAER---VASATAELLAGLEE 64
           T  A  S   SN  T +      A  +  +  T +   Q  ER   +ASA+ E      E
Sbjct: 438 TGQAVQSMQQSNQRTQSTLEMARAAGVALEQITQSI-HQINERNLVIASASEEQAQVSRE 496

Query: 65  SSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFI 104
               +  +R    Q A GA+++S AT +       +N  +
Sbjct: 497 VDRNLVNIRDLATQSASGAKQTSDATHELSRLAVGLNAMV 536