Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 634 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2
Score = 121 bits (304), Expect = 8e-32
Identities = 77/277 (27%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 41 LARKQQAAERVASATAELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETA 96
L + Q+A + + +L+ G+ E +SA QL + Q + G + T Q TA
Sbjct: 338 LGQLQRAMQNMTVGLRQLIGGISEGVTQIASAAEQLSAVTVQTSAGVNSQKAETDQVATA 397
Query: 97 VSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIEL 156
+ +M + E A+ A ++ + + + + E ++ ++ + +S M EL
Sbjct: 398 MHEMTATVQEVASNAEEASEAAVAADAQAREGDKVVGEAIAQIERLALEVGNSTTAMGEL 457
Query: 157 SEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNA 216
++ KI + + +A QTNLLALNAAIEA RAG+ G+GFAVVAD VR+LA++ +K+
Sbjct: 458 KRESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKST 517
Query: 217 ANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLL 276
IE LI + +G E V+ + +S +S V+ L I + + ++ +
Sbjct: 518 EEIEELILGLQSGTEQVAATLDNSRSLTDSSVELTRRAGASLENITRTVSAIQAMNQQIA 577
Query: 277 KAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
AA++ S+ A + +V +++ +++ EE+ S
Sbjct: 578 AAAEQQSAVAEEINRSVLNVRDVSEQTASSSEETAAS 614
Score = 108 bits (270), Expect = 7e-28
Identities = 136/596 (22%), Positives = 250/596 (41%), Gaps = 92/596 (15%)
Query: 90 TKQSETAVSQMNNFINE-QATYATQSKQILTKLEQDIVD-----VANKINEMVSNVQTSS 143
T + E Q+N+ I + A T +QI + ++D VA + ++
Sbjct: 68 TSRGENGPQQVNDLIGKLDAGLKTARQQIEQPADAALIDKQLAAVAEYKKAFAEMTRATA 127
Query: 144 ERQNDSVKRMIELSEQAAKINDAVKQVIH---IADQTNLLALNAAIEAGRAGKHGKGFA- 199
R++ K A++ + K ++ +A N + L+ AI+ R G ++
Sbjct: 128 SREDARSKLGASADNAVARVAEVEKSLLQGDSVAQFNNAVTLSKAIQQARYQVRGYTYSG 187
Query: 200 ----------VVADTVRTLA----EKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAE 245
+ + ++ LA + E++A N++ I+ VS S A
Sbjct: 188 KNEAQQPALEAIDNVLKLLARLPEQLPEEHAVNLQQANDSINVYRAAVSQFRDSQIDNAA 247
Query: 246 S---EVQKGHVV---NKQLTLIRNEMVDL--VKDSEVLLKAADEMSSAAVIA-------- 289
+ ++G V+ +++LT+ + + DL K L+ AA VIA
Sbjct: 248 ALKRMAEQGDVLIDASQKLTVSQTAVRDLDAAKAKTFLVSAAVLALLFGVIAALVITRQI 307
Query: 290 -------LKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTST 342
LK +E V+ + E L Q Q A+ + L E T
Sbjct: 308 VGPLGQTLKIAERVAAGDLTHNLTSERR-DELGQLQRAMQNMTVGLRQLIGGISE--GVT 364
Query: 343 DIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQ 402
I ++E+++A + SAG+ ++++ A++++++ Q +A + E + +
Sbjct: 365 QIASAAEQLSAVTVQTSAGVNSQKAETDQVATAMHEMTATVQEVASNAEEASEAAVAADA 424
Query: 403 GARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQ 462
AR G + ++ E++ L + ST A M ++R S +
Sbjct: 425 QAREGDKVVGEAIAQIERLA--------------LEVGNSTTA-------MGELKRESDK 463
Query: 463 IDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQ 522
I ++D I +V+ QT +LA+N A+EAARAGE G+GFAVV+ ++++LA ++ E+I++
Sbjct: 464 IGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEEL 523
Query: 523 VKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGI 582
+ +Q ++ A T LDN RS V ++R S I
Sbjct: 524 ILGLQ------------------SGTEQVAAT---LDNSRSLTDSSVELTRRAGASLENI 562
Query: 583 ERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
R+++ +A QQIA AAE+ S E + + + AS+ E AA + EL
Sbjct: 563 TRTVSAIQAMNQQIAAAAEQQSAVAEEINRSVLNVRDVSEQTASSSEETAASSAEL 618
Score = 38.5 bits (88), Expect = 9e-07
Identities = 71/366 (19%), Positives = 161/366 (43%), Gaps = 46/366 (12%)
Query: 292 GSESVSQAAQEQSAACEESLKSLDQQQIA--LDGAVTAAQSLDELTDEL-RTSTDIVKSS 348
G + V+ + A + + + ++Q A +D + A + E+ R + +
Sbjct: 74 GPQQVNDLIGKLDAGLKTARQQIEQPADAALIDKQLAAVAEYKKAFAEMTRATASREDAR 133
Query: 349 EEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGK 408
++ A+A+ A + E+ +S + G + A ++K+++ + Q+ GK
Sbjct: 134 SKLGASADNAVARVAEVEKSL--LQGDSVAQFNNAVTLSKAIQQ---ARYQVRGYTYSGK 188
Query: 409 ERAES-SLKACEKMLTGI--------EENKTTVDEMILAITESTKAATE----NLNEMAN 455
A+ +L+A + +L + EE+ + + +I A ++ ++ A
Sbjct: 189 NEAQQPALEAIDNVLKLLARLPEQLPEEHAVNLQQANDSINVYRAAVSQFRDSQIDNAAA 248
Query: 456 IERISRQIDKIVDGISNVSI-QTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAE 514
++R++ Q D ++D +++ QTA+ + +AA+A + AV++ +A A
Sbjct: 249 LKRMAEQGDVLIDASQKLTVSQTAVRDL----DAAKAKTFLVSAAVLALLFGVIA--ALV 302
Query: 515 NAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKR 574
QI V + + + I + A L+ + ++ +L ++ M ++ +G ++
Sbjct: 303 ITRQI---VGPLGQTLKIAERVAAGDLTHNLTSERR-----DELGQLQRAMQNMTVGLRQ 354
Query: 575 ISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAV 634
+ GGI G+ QIA+AAE+ S T + + Q + T ++A+A+ + A
Sbjct: 355 L---IGGISE-------GVTQIASAAEQLSAVTVQTSAGVNSQKAETDQVATAMHEMTAT 404
Query: 635 ADELQS 640
E+ S
Sbjct: 405 VQEVAS 410
Score = 38.1 bits (87), Expect = 1e-06
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 48 AERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQS----ETAVSQMNNF 103
A+ V S EE + L+S EQ+A + S S T S A + + N
Sbjct: 503 ADEVRSLAQRTQKSTEEIEELILGLQSGTEQVAATLDNSRSLTDSSVELTRRAGASLENI 562
Query: 104 INEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKI 163
+ ++QI EQ VA +IN V NV+ SE+ S + S + A++
Sbjct: 563 TRTVSAIQAMNQQIAAAAEQQSA-VAEEINRSVLNVRDVSEQTASSSEETAASSAELARL 621
Score = 27.7 bits (60), Expect = 0.002
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 38 ARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAV 97
A TL + + T A LE + ++ +++ +QIA AE+ S+ ++ +V
Sbjct: 535 AATLDNSRSLTDSSVELTRRAGASLENITRTVSAIQAMNQQIAAAAEQQSAVAEEINRSV 594
Query: 98 SQMNNFINEQATYATQ 113
+ + ++EQ +++
Sbjct: 595 LNVRD-VSEQTASSSE 609